Repositories list

• galaxy-image-analysis

  Public
  Galaxy tools for image analysis

  usegalaxyusegalaxy-eu

  Python

  •

  MIT License

  •17•16•3•0•Updated Mar 7, 2025Mar 7, 2025

• giatools

  Public
  Tools required for Galaxy Image Analysis

  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

• mobi-fs5-python

  Public template
  Molecular Biotechnology, Bioinformatik 5. FS, Vertiefungspraktikum Python Standard, Gruppe Rohr

  heidelberg-universitypython-exercisesmobi-fs5-python

  Jupyter Notebook

  •

  MIT License

  •1•1•0•0•Updated Feb 11, 2025Feb 11, 2025

• github-workflows

  Public
  GitHub workflows used across many repositories

  MIT License

  •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

• segmetrics

  Public
  Image segmentation and object detection performance measures

  image-segmentationinstance-segmentationobject-segmentation+ 3segmentation-evaluationsegmentation-analysissegmentation-accuracy

  Python

  •

  MIT License

  •0•2•0•1•Updated Feb 11, 2025Feb 11, 2025

• mobi-fs3-python

  Public template
  Molecular Biotechnology, Methoden der Bioinformatik 3. FS, Bildanalyse, Programmierübungen

  heidelberg-universitypython-exercisesmobi-fs3-python

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Feb 7, 2025Feb 7, 2025

• SuperDSM

  Public
  SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.

  object-detectionimage-segmentationcell-segmentation+ 4instance-segmentationcell-detectionobject-segmentationcell-counting

  Python

  •

  Other

  •1•3•1•1•Updated Jan 16, 2025Jan 16, 2025

• SyntheticData

  Public
  0•0•0•0•Updated Aug 9, 2023Aug 9, 2023

• staged-recipes-random-name

  Public
  A place to submit conda recipes before they become fully fledged conda-forge feedstocks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5.2k•0•0•0•Updated Mar 7, 2023Mar 7, 2023

• ColocQuant-ColocJ

  Public
  Python

  •0•1•0•0•Updated Aug 3, 2022Aug 3, 2022

• ActiPHV

  Public
  R

  •0•0•0•0•Updated Oct 28, 2019Oct 28, 2019

• quantAFM

  Public
  quantAFM toolbox to automatically quantify filamentous complexes from AFM images

  TeX

  •0•0•0•0•Updated Jun 2, 2019Jun 2, 2019

• docker-paraviewweb

  Public
  🐳 ParaViewWeb running in a docker container. This image can be used to integrate ParaViewWeb into Galaxy

  Dockerfile

  •

  MIT License

  •7•11•0•0•Updated Sep 14, 2018Sep 14, 2018