Repositories list

• BioGenies.github.io

  Public
  JavaScript

  •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• seminar

  Public
  HTML

  •5•8•0•0•Updated Nov 19, 2024Nov 19, 2024

• amyloid-database-list

  Public
  databasedatabasesinteraction+ 8aggregationaprsamyloid-fibrilsprionprionsidpsamyloidosis+ 1

  HTML

  •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• imputomics

  Public
  shinywebserverimputation+ 3metabolomicsamputationmissing-values

  R

  •3•10•6•0•Updated Nov 7, 2024Nov 7, 2024

• tidysq

  Public
  tidy processing of biological sequences in R

  bioinformaticsrs3+ 9tidyverserstatsbioconductorfastatidysequencestibble+ 2

  C++

  •4•35•50•0•Updated Oct 24, 2024Oct 24, 2024

• kmerFilters

  Public
  Tools for filtering k-mer data

  genomicsproteomicsk-mer+ 2peptide-identificationn-gram

  R

  •1•0•0•0•Updated Sep 14, 2024Sep 14, 2024

• AMPBenchmark

  Public
  R

  •0•8•0•0•Updated Jul 29, 2024Jul 29, 2024

• imputomics-ws

  Public
  GNU General Public License v3.0

  •0•0•0•0•Updated May 16, 2024May 16, 2024

• countfitteR

  Public
  cancercancer-imaging-researchcount-data+ 2count-distributionfoci

  CSS

  •3•4•0•0•Updated Jul 26, 2023Jul 26, 2023

• PlastoGram-analysis

  Public
  HTML

  •0•0•0•0•Updated May 24, 2023May 24, 2023

• PlastoGram

  Public
  Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).

  bioinformaticsrandom-forestr-package+ 6hmmerchloroplastplastidsubchloroplast-localizationsubplastid-localizationhmm-profile

  R

  •0•0•0•0•Updated May 24, 2023May 24, 2023

• MetaboModelleR

  Public
  R

  •2•3•5•1•Updated Feb 11, 2023Feb 11, 2023

• peptide-prediction-list

  Public
  Collects software dedicated to predicting specific properties of peptides

  bioinformaticsdeep-learningawesome-list+ 10peptide-identificationpeptidesprediction-modelantimicrobial-peptidesneuropeptidescell-penetrating-peptidesanticancer-peptides+ 3

  Shell

  •8•50•1•0•Updated Nov 25, 2022Nov 25, 2022

• NegativeDatasets

  Public
  Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data.

  benchmarkingpeptidesantimicrobial-peptides+ 3negative-samplingmachine-learningr

  HTML

  •0•0•0•0•Updated Aug 25, 2022Aug 25, 2022

• NegativeDatasetsArchitectures

  Public
  Python

  •0•0•0•0•Updated Aug 22, 2022Aug 22, 2022

• golem-modules-example

  Public
  Example of golem app with simple modules from biogenies seminar

  R

  •0•0•0•0•Updated Jun 28, 2022Jun 28, 2022

• SLOPE

  Public
  Sorted L1 Penalized Estimation

  R

  •

  GNU General Public License v3.0

  •10•0•2•0•Updated Apr 14, 2022Apr 14, 2022

• critical-assessment-list

  Public
  0•0•0•0•Updated Sep 8, 2021Sep 8, 2021

• tidysqadv

  Public
  advanced algorithms on biological sequences

  C++

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated May 29, 2021May 29, 2021

• shinydetails

  Public
  R

  •1•4•12•0•Updated Feb 24, 2021Feb 24, 2021

• CancerGram

  Public
  Predicts anticancer peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.

  bioinformaticsr-packagek-mer+ 4peptide-identificationn-gramrandom-forestsanticancer-peptides

  R

  •0•4•0•0•Updated Nov 19, 2020Nov 19, 2020

• CancerGram-analysis

  Public
  HTML

  •0•1•0•0•Updated Nov 5, 2020Nov 5, 2020

• BiolettaBillas

  Public
  Biosława Biospodarek, known by her stage name Bioletta Billas, was a Polish and international cabaret star, R package developer, actress, imposter and songwriter.

  R

  •

  GNU General Public License v3.0

  •0•6•0•0•Updated Nov 3, 2020Nov 3, 2020

• CancerGramModel

  Public
  R

  •0•1•0•0•Updated Oct 8, 2020Oct 8, 2020

• tidypkg

  Public
  tidypkg seamlessly supports good practices in the package development for R.

  R

  •0•1•0•0•Updated Oct 1, 2020Oct 1, 2020

• countfitteR-simulations

  Public
  PostScript

  •0•0•0•0•Updated Sep 9, 2020Sep 9, 2020