Repositories list

• bigpicture-cytomine-python-client

  Public
  Client to interact with Cytomine BIGPICTURE API in Python.

  Python

  •

  Apache License 2.0

  •19•0•0•0•Updated Apr 30, 2025Apr 30, 2025

• bigpicture-pims

  Public
  Python Image Management Server

  Python

  •

  Apache License 2.0

  •8•0•0•0•Updated Apr 30, 2025Apr 30, 2025

• pims-plugin-format-dicom

  Public
  PIMS plugin to read DICOM files

  plugindicompims+ 1cytomine

  Python

  •

  Apache License 2.0

  •6•0•1•0•Updated Apr 29, 2025Apr 29, 2025

• Cytomine-pims

  Public
  Python Image Management Server

  pythonimagerabbitmq+ 2celeryimage-server

  Python

  •

  Apache License 2.0

  •8•0•0•0•Updated Apr 28, 2025Apr 28, 2025

• Cytomine-bigpicture-edition

  Public
  Cytomine BIGPICTURE Edition

  Shell

  •

  Apache License 2.0

  •6•0•0•0•Updated Apr 23, 2025Apr 23, 2025

• bigpicture-cytomine-web-ui

  Public
  Cytomine-Web-UI is the graphical user interface for Cytomine bigpicture edition.

  Vue

  •

  Apache License 2.0

  •25•0•0•0•Updated Apr 23, 2025Apr 23, 2025

• bigpicture-cytomine-core

  Public
  Cytomine BIGPICTURE Core in Spring Boot.

  Java

  •

  Apache License 2.0

  •8•0•0•0•Updated Apr 23, 2025Apr 23, 2025

• Cytomine-web-ui

  Public
  Cytomine-Web-UI is the graphical user interface for Cytomine ULiège edition.

  vuejs2bulmabuefy+ 1cytomine

  Vue

  •

  Apache License 2.0

  •25•5•18•0•Updated Apr 23, 2025Apr 23, 2025

• Cytomine-core

  Public
  Cytomine Core of ULiège edition.

  javaspring-bootcytomine

  Java

  •

  Apache License 2.0

  •8•0•0•0•Updated Apr 23, 2025Apr 23, 2025

• Cytomine-js-client

  Public
  Client to interact with Cytomine API in Javascript. Our fork includes R&D experimental features. See @cytomine for official releases.

  javascriptcytomine

  JavaScript

  •

  Apache License 2.0

  •9•1•0•0•Updated Apr 15, 2025Apr 15, 2025

• Cytomine-uliege-edition

  Public
  Cytomine ULiège Edition

  docker-composecytomine

  Shell

  •

  Apache License 2.0

  •6•1•0•0•Updated Apr 11, 2025Apr 11, 2025

• Cytomine-java-client

  Public
  Client to communicate with Cytomine API in Java. Our fork includes R&D experimental features. See @cytomine for official releases.

  javaapicytomine

  Java

  •

  Apache License 2.0

  •14•1•0•0•Updated Apr 5, 2025Apr 5, 2025

• schema

  Public
  JSON Schema for GeoJSON

  schemajson-schemageojson

  JavaScript

  •

  MIT License

  •19•0•0•1•Updated Mar 24, 2025Mar 24, 2025

• task-example

  Public
  Example of a Cytomine task

  Python

  •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

• task-stardist

  Public
  Integration of Stardist algorithm as a Cytomine task

  cytominestardist

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

• Cytomine-postgis

  Public
  Cytomine PostGis ULiège configuration.

  databasepostgis

  Dockerfile

  •

  Apache License 2.0

  •3•0•0•0•Updated Mar 13, 2025Mar 13, 2025

• .github

  Public
  Community health files for the @Cytomine-ULiege organization

  0•0•1•0•Updated Mar 12, 2025Mar 12, 2025

• Cytomine-nginx

  Public
  Cytomine NGINX ULiège configuration.

  nginx

  Dockerfile

  •

  Apache License 2.0

  •3•0•0•0•Updated Mar 11, 2025Mar 11, 2025

• Cytomine-docker-entrypoint-scripts

  Public
  Shell

  •

  Apache License 2.0

  •3•0•0•0•Updated Mar 10, 2025Mar 10, 2025

• Cytomine-cbir

  Public
  Content-Based Image Retrieval Server

  cbircontent-based-image-retrieval

  Python

  •

  Apache License 2.0

  •0•0•1•1•Updated Mar 6, 2025Mar 6, 2025

• Cytomine-software-router

  Public
  Cytomine module for communication between Cytomine-Core and remote processing servers. Our fork includes R&D experimental features. See @cytomine for official releases.

  appsoftware

  Groovy

  •

  Apache License 2.0

  •9•0•0•0•Updated Mar 5, 2025Mar 5, 2025

• Cytomine-python-client

  Public
  Client to interact with Cytomine API in Python. Our fork includes R&D experimental features. See @cytomine for official releases.

  pythoncytomine

  Python

  •

  Apache License 2.0

  •19•5•6•3•Updated Mar 4, 2025Mar 4, 2025

• alpine-task-utils

  Public
  Alpine image with utility tools

  Dockerfile

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• app-integration-example

  Public
  Proof-of-concept algorithm integration to Cytomine App Engine

  Apache License 2.0

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• S_Segment-ML-MultiOutputET-Pred-BI

  Public
  Software that uses a binary segmentation model based on subwindow and multiple output extra-trees to segment an image

  Python

  •4•0•0•1•Updated Jul 23, 2024Jul 23, 2024

• Cytomine-project-migrator

  Public
  Utility to migrate a Cytomine project from a Cytomine instance to another.

  cytomine

  Python

  •

  Apache License 2.0

  •1•0•1•2•Updated Jan 2, 2024Jan 2, 2024

• S_Create_Annotations

  Public
  Create annotations from a given threshold on a heatmap

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 13, 2023Dec 13, 2023

• Cytomine-core-legacy

  Public
  This repository hosts the legacy Cytomine-Core, which is the main web server implementing the Cytomine API. Our ULiège fork includes R&D experimental features. See @cytomine for official releases.

  groovygrailslegacy-code

  Groovy

  •

  Apache License 2.0

  •32•6•4•0•Updated Sep 22, 2023Sep 22, 2023

• Cytomine-bootstrap

  Public
  This repository hosts the Cytomine Community ULiège Legacy Edition. Our fork includes R&D experimental features. See @cytomine for official releases.

  shellbashlegacy+ 1cytomine

  Shell

  •

  Apache License 2.0

  •29•4•1•0•Updated Aug 28, 2023Aug 28, 2023

• S_CellDetect_Stardist_HE_ROI

  Public
  Cell (Nuclei) Detection in ROI using Stardist

  stardistdeep-learning

  Python

  •

  Apache License 2.0

  •14•8•0•4•Updated Jul 25, 2023Jul 25, 2023