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    46 repositories

    • usortm

      Public
      Tools for rapid and low-cost parsed DNA library generation
      Python
      •0•1•0•0•Updated Apr 3, 2026Apr 3, 2026

    • data-portal

      Public
      Data files for the Fordyce Lab Data Portal (fordycelab.com/data)
      0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

    • magnify

      Public
      A microscopy image processing toolkit.
      Python
      •2•3•4•0•Updated Jan 31, 2026Jan 31, 2026

    • ImageStitcher

      Public
      RunPack and MicroManager image stitching, flat-field correction, and background subtraction
      Python
      •
      MIT License
      •2•1•0•0•Updated Sep 18, 2025Sep 18, 2025

    • arrayprint

      Public
      Programmatic spotting using Scienion S3 liquid-handling robots
      Python
      •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • htmek

      Public
      Shared processing scripts for HT-MEK experiments that have been worked up by magnify.
      Python
      •1•1•0•0•Updated Aug 20, 2025Aug 20, 2025

    • ProcessingPack

      Public
      HT-MEK Image Processing
      Python
      •
      MIT License
      •1•0•0•1•Updated Jun 24, 2025Jun 24, 2025

    • AcqPack

      Public
      Code to perform acquisitions (experiment automation and hardware control).
      automationlabacquisition
      automationlabacquisitionhardware-controller
      Jupyter Notebook
      •
      MIT License
      •1•2•1•30•Updated Dec 8, 2024Dec 8, 2024

    • htmek-workup

      Public
      Interactive Python notebooks for HT-MEK data processing
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • wellception

      Public
      Shell
      •1•0•0•0•Updated Aug 3, 2023Aug 3, 2023

    • MicrowellStitcher

      Public
      Stitch rastered arrays of microwell images
      Python
      •0•0•0•0•Updated Jul 28, 2023Jul 28, 2023

    • MicrowellProcessor

      Public
      Python
      •0•0•0•0•Updated Jul 28, 2023Jul 28, 2023

    • STR_analysis

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jul 24, 2023Jul 24, 2023

    • MicrowellProcessor_old

      Public
      Process stitched microwell images to extract subarrays
      Python
      •0•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • tessellate

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•20•Updated Dec 8, 2022Dec 8, 2022

    • MRBLEs

      Public
      Decoding and analysis software for MRBLEs (Microspheres with Ratiometric Barcode Lanthanide Encoding).
      gaussian-mixture-modelsspectral-unmixingmrbles
      gaussian-mixture-modelsspectral-unmixingmrblessuspension-arraysoptical-encodingmrble-pep
      Python
      •
      MIT License
      •1•4•0•1•Updated Dec 1, 2022Dec 1, 2022

    • uPICM

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Aug 2, 2021Aug 2, 2021

    • HT-MEK_KineticThermodynamicFitting

      Public
      Higher order kinetic analysis: Michaelis-Menten, inhibition fitting, data aggregation, and statistics
      Mathematica
      •0•2•0•0•Updated May 17, 2021May 17, 2021

    • RunPack

      Public
      HT-MEK Experimental Acquisition
      Jupyter Notebook
      •
      MIT License
      •0•5•0•0•Updated May 17, 2021May 17, 2021

    • seequence

      Public
      Display/explore (bio)sequences with Bokeh
      Python
      •0•1•0•0•Updated Mar 25, 2021Mar 25, 2021

    • RunPack-STAMMP

      Public
      Hardware control for high-throughput microfluidic experiments
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 13, 2020Sep 13, 2020

    • ProcessingPack-STAMMP

      Public
      Image processing for high-throughput microfluidic experiments via STAMMP
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 13, 2020Sep 13, 2020

    • designQuikChangePrimers

      Public
      Batch design of any number of QuickChange primers, including hairpin Tm calculator (using primer3-py)
      Mathematica
      •0•0•0•0•Updated Jun 20, 2020Jun 20, 2020

    • micrio

      Public
      Open-source autosampler and fraction collector for microfluidic applications
      automationlabmicrofluidics
      automationlabmicrofluidicsautosamplerfraction-collector
      Jupyter Notebook
      •
      Other
      •3•5•0•0•Updated Oct 5, 2019Oct 5, 2019

    • sherlock_tutorial

      Public
      Sherlock cluster submission tutorial
      0•0•0•0•Updated Jul 30, 2019Jul 30, 2019

    • daceg

      Public
      Directed Acyclic Experimental Computational Graphs
      0•0•0•0•Updated Oct 18, 2018Oct 18, 2018

    • kyle2

      Public
      REDI assay library design
      Python
      •0•0•0•0•Updated Jul 3, 2018Jul 3, 2018

    • fordycelab.github.io

      Public
      Fordyce lab research blog
      Ruby
      •0•0•0•0•Updated May 21, 2018May 21, 2018

    • TFDB

      Public
      Notebooks and scripts for database collecting
      Python
      •0•0•0•0•Updated May 7, 2018May 7, 2018

    • adam2

      Public
      Adam 2.0 - Hybridization Oligo Design Utility
      Python
      •
      MIT License
      •1•0•0•0•Updated May 4, 2018May 4, 2018
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