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    15 repositories

    • mdCLA

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 21, 2026Mar 21, 2026

    • STED-EC

      Public
      This GitHub repository contains the reproduction of key figures from the article "A Single-Cell Time-Series Atlas of Endothelial Cell Embryonic Development".
      Jupyter Notebook
      •0•4•0•0•Updated Mar 3, 2026Mar 3, 2026

    • Polyomino

      Public
      Polyomino：Mapping cell locations via multi-layer regionalization constraints
      Jupyter Notebook
      •
      MIT License
      •1•36•0•0•Updated Nov 20, 2025Nov 20, 2025

    • scarf

      Public
      SCARF: A Single Cell ATAC-seq and RNA-seq Foundation Model
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•5•1•0•Updated Sep 26, 2025Sep 26, 2025

    • iceDP

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated May 19, 2025May 19, 2025

    • GREE

      Public
      Genome-wide cis-Regulatory Element Explorer
      R
      •
      Other
      •0•3•0•0•Updated Jun 23, 2024Jun 23, 2024

    • scTE

      Public
      Jupyter Notebook
      •
      MIT License
      •31•118•81•0•Updated Apr 24, 2024Apr 24, 2024

    • diopy

      Public
      The single-cell data IO between R and Python(Python version)
      Python
      •
      GNU General Public License v3.0
      •3•2•1•1•Updated Apr 11, 2024Apr 11, 2024

    • GALILEO

      Public
      Gene AccessibiLIty score to Locate Enhancer-of-Origin
      R
      •
      Other
      •0•0•0•0•Updated Jan 4, 2023Jan 4, 2023

    • celltype_predict

      Public
      Python
      •0•1•0•0•Updated Dec 7, 2022Dec 7, 2022

    • scDIOR

      Public
      scDIOR: Single cell data IO softwaRe
      HTML
      •
      GNU General Public License v3.0
      •12•155•17•0•Updated Feb 15, 2022Feb 15, 2022

    • SOT

      Public
      Single-cell Orientation Tracing
      single-cell-rna-seq
      single-cell-rna-seq
      R
      •2•22•1•0•Updated Jan 23, 2022Jan 23, 2022

    • dior

      Public
      The scRNA-seq data IO between R and Python(R version)
      R
      •
      GNU General Public License v3.0
      •1•7•2•0•Updated Nov 12, 2021Nov 12, 2021

    • JiekaiLab.github.io

      Public
      JiekaiLab Tutorial
      HTML
      •0•0•0•0•Updated Jan 18, 2021Jan 18, 2021

    • scTE-1

      Public
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated Jan 6, 2021Jan 6, 2021
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