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@MathMarEcol Mathematical Marine Ecology Lab

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    30 repositories

    • VoCC

      Public
      Package for the calculation of the Velocity of Climate Change (VoCC) and related climatic metrics
      R
      •
      GNU Affero General Public License v3.0
      •15•1•0•0•Updated Dec 3, 2025Dec 3, 2025

    • IMCC7_ConsPlanWorkshop

      Public
      Conservation Planning Workshop at IMCC7
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • MathMarEcol.github.io

      Public
      Lab website
      Lua
      •8•0•1•1•Updated Oct 15, 2025Oct 15, 2025

    • zoomss

      Public
      R package for the Zooplankton Model of Size Spectra (ZooMSS)
      R
      •
      Other
      •1•0•12•0•Updated Sep 10, 2025Sep 10, 2025

    • VoCCdata

      Public
      Companion data sets to the VoCC package vingette "VoCC_Tutorial" for reproduction of examples in Garcia Molinos et al. 2019 MEE
      R
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Aug 27, 2025Aug 27, 2025

    • spatialplanr

      Public
      spatialplanr redirection page
      HTML
      •
      MIT License
      •0•0•4•0•Updated Jun 15, 2025Jun 15, 2025

    • utils4mme

      Public
      A collection of utilities developed by and for the Mathematical Marine Ecology Lab.
      R
      •
      Other
      •0•0•4•0•Updated May 16, 2025May 16, 2025

    • VoCC_data_sets

      Public
      Companion data sets to the VoCC package vingette "VoCC_Tutorial" for reproduction of examples in Garcia Molinos et al. 2019 MEE
      1•0•0•0•Updated Apr 28, 2025Apr 28, 2025

    • CMIP6_ZoopStatisticalModel

      Public
      Statistical models for analysis of global zooplankton biomass patterns
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Feb 3, 2025Feb 3, 2025

    • Welcome

      Public
      A repo for the MME labs markdown book outlining all the protocols, procedures and misc information
      HTML
      •2•0•14•0•Updated Sep 20, 2024Sep 20, 2024

    • GlobalFishingWatch

      Public
      Repository for Global Fishing Watch data recovery.
      HTML
      •
      MIT License
      •1•1•0•0•Updated May 30, 2024May 30, 2024

    • boats_v1

      Public
      First version of boats with a single community of commercial species
      MATLAB
      •2•0•0•0•Updated May 21, 2024May 21, 2024

    • aus_cpr_for_bioregions

      Public
      Data and scripts to load CPR data into R. Data is collected from AusCPR, SOCPR, NRS, related surveys from IMOS and other plankton datasets.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 27, 2024Mar 27, 2024

    • CastCluster

      Public
      CAST algorithm implemented as an R package
      R
      •
      GNU General Public License v3.0
      •0•0•4•0•Updated Mar 27, 2024Mar 27, 2024

    • gfbootstrap

      Public
      Bootstrapping Gradient Forest - R package
      R
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Mar 26, 2024Mar 26, 2024

    • pdyer_aus_bio

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•18•0•Updated Mar 26, 2024Mar 26, 2024

    • ZooMSS_ClimateChange

      Public
      Using ZooMSS to assess climate change impacts on global marine ecosystem
      HTML
      •
      GNU General Public License v3.0
      •1•1•2•0•Updated May 22, 2023May 22, 2023

    • ZooMSS_FishMIP_CMIP5

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 17, 2023May 17, 2023

    • ZooMSS_FishMIP_ISIMIP3b

      Public
      ZooMSS files for FishMiP
      HTML
      •
      MIT License
      •0•0•0•0•Updated May 17, 2023May 17, 2023

    • ZooMSS_FishMIP_DisentanglingClimate

      Public
      Code for FishMIP climate drivers paper (Heneghan et. al)
      R
      •
      MIT License
      •0•0•0•0•Updated May 17, 2023May 17, 2023

    • ZoopModelSizeSpectra

      Public
      Repository for the Zooplankton Model of Size Spectra (ZooMSS)
      R
      •
      GNU General Public License v3.0
      •4•4•1•0•Updated Aug 26, 2022Aug 26, 2022

    • MyFirstPkg

      Public
      A short tutorial on how to create an R package
      MIT License
      •0•1•0•0•Updated Mar 2, 2022Mar 2, 2022

    • Guide_ClimateModelsR

      Public
      HTML
      •3•3•0•0•Updated Oct 19, 2021Oct 19, 2021

    • StateOfEnvironment2021

      Public
      Code and Analysis for HABs and Secondary Production Sections of SOE2021
      R
      •0•0•0•0•Updated Jun 15, 2021Jun 15, 2021

    • rphildyerphd

      Public
      R package for Phil Dyer's PhD
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 30, 2021Apr 30, 2021

    • PacificCentredRobinsonFromRaster

      Public
      Plot raster as Pacific centred Robinson projection
      R
      •0•2•0•0•Updated Mar 1, 2021Mar 1, 2021

    • MATH3070_SizeSpectrumModel

      Public
      Prof. Anthony Richardson (UQ) code and data for MATH3070
      R
      •1•0•0•0•Updated Nov 22, 2020Nov 22, 2020

    • BOATS_workshop

      Public
      MATLAB
      •1•0•1•0•Updated Oct 29, 2020Oct 29, 2020

    • PHB_phyto_CTI

      Public
      Comparison of CTI for D&C, Ajani and IMOS
      R
      •0•1•0•0•Updated Mar 30, 2020Mar 30, 2020

    • getafix_instructions

      Public archive
      How to use Getafix
      HTML
      •0•0•0•0•Updated Jul 15, 2019Jul 15, 2019