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    34 repositories

    • med-lm-envs

      Public
      Automated LLM evaluation suite for medical tasks
      Python
      •
      MIT License
      •35•29•6•14•Updated Apr 11, 2026Apr 11, 2026

    • med-lm-train

      Public
      Python
      •4•1•0•1•Updated Apr 10, 2026Apr 10, 2026

    • thunder

      Public
      [NeurIPS25 D&B Spotlight] A tile-level histopathology image understanding benchmark
      Python
      •
      Creative Commons Attribution 4.0 International
      •14•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • smri-fm

      Public
      Python
      •3•0•0•1•Updated Apr 7, 2026Apr 7, 2026

    • OpenMidnight

      Public
      Python
      •
      Apache License 2.0
      •19•46•15•6•Updated Apr 6, 2026Apr 6, 2026

    • eva-probe

      Public
      Evaluation framework for oncology foundation models (FMs)
      Python
      •
      Apache License 2.0
      •38•2•21•5•Updated Feb 25, 2026Feb 25, 2026

    • SwiFT

      Public
      Official repo for SwiFT: Swin 4D fMRI Transformer
      Python
      •
      Apache License 2.0
      •20•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • fmri-fm-eval

      Public
      Jupyter Notebook
      •
      Other
      •10•6•0•3•Updated Jan 17, 2026Jan 17, 2026

    • fmri-fm

      Public
      MedARC fMRI foundation model
      Jupyter Notebook
      •
      Other
      •11•34•7•3•Updated Jan 15, 2026Jan 15, 2026

    • Brain-Harmony

      Public
      Official codebase for "Brain Harmony: A Multimodal Foundation Model Unifying Morphology and Function into 1D Tokens" (NeruIPS 2025).
      Python
      •49•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • BrainLM

      Public
      Jupyter Notebook
      •
      Other
      •4•0•0•0•Updated Dec 29, 2025Dec 29, 2025

    • Brain-JEPA

      Public
      Official codebase for "Brain-JEPA: Brain Dynamics Foundation Model with Gradient Positioning and Spatiotemporal Masking" (NeurIPS 2024, Spotlight).
      Python
      •39•0•0•0•Updated Dec 22, 2025Dec 22, 2025

    • path-fm-dinov3

      Public
      Python
      •
      Other
      •3•3•0•0•Updated Nov 29, 2025Nov 29, 2025

    • med-lm-data

      Public
      Processing post-training datasets for medicine
      2•0•3•1•Updated Sep 3, 2025Sep 3, 2025

    • dinov3

      Public
      MedARC DinoV3
      Jupyter Notebook
      •
      Other
      •808•1•0•0•Updated Aug 29, 2025Aug 29, 2025

    • algonauts2025

      Public
      Repository for MedARC group tackling Algonauts 2025 challenge
      Jupyter Notebook
      •
      MIT License
      •4•11•0•0•Updated Aug 5, 2025Aug 5, 2025

    • MIRAGE

      Public
      Jupyter Notebook
      •
      MIT License
      •0•6•6•0•Updated May 28, 2025May 28, 2025

    • MindEyeV2

      Public
      Jupyter Notebook
      •
      MIT License
      •39•200•12•0•Updated May 28, 2025May 28, 2025

    • clinical-lm-datasets

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 5, 2025Jan 5, 2025

    • CLIBP

      Public
      Contrastive Language–Image-Brain Pre-training
      Jupyter Notebook
      •
      MIT License
      •0•5•0•0•Updated Aug 17, 2024Aug 17, 2024

    • brain-image-filtering

      Public
      Using fMRI encoding models to improve image filtering ML approaches
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Jul 9, 2024Jul 9, 2024

    • mindeye2

      Public
      mindeye v2
      HTML
      •4•1•0•0•Updated Jul 7, 2024Jul 7, 2024

    • fMRI-reconstruction-NSD

      Public
      fMRI-to-image reconstruction on the NSD dataset.
      Jupyter Notebook
      •
      MIT License
      •54•369•24•0•Updated May 22, 2024May 22, 2024

    • datatrove

      Public
      Freeing data processing from scripting madness by providing a set of platform-agnostic customizable pipeline processing blocks.
      Python
      •
      Apache License 2.0
      •252•0•0•0•Updated Feb 29, 2024Feb 29, 2024

    • lm-evaluation-harness-v2

      Public
      A framework for few-shot evaluation of language models.
      Python
      •
      MIT License
      •3.2k•0•0•0•Updated Feb 22, 2024Feb 22, 2024

    • stable_health

      Public
      Training BioMedical / Clinical LLMs with QLoRA + FSDP
      Jupyter Notebook
      •202•1•0•0•Updated Feb 20, 2024Feb 20, 2024

    • contamination

      Public
      Script to detect whether a model was trained on test data
      Python
      •0•0•0•0•Updated Feb 7, 2024Feb 7, 2024

    • lm-evaluation-harness

      Public
      A framework for few-shot evaluation of autoregressive language models.
      Python
      •
      MIT License
      •3.2k•1•0•0•Updated Jan 22, 2024Jan 22, 2024

    • mindeye

      Public
      mindeye
      HTML
      •4•1•0•0•Updated Oct 10, 2023Oct 10, 2023

    • fMRI-Algonauts-Challenge-2023

      Public
      Predicting responses in the human brain as participants perceive complex natural visual scenes
      Jupyter Notebook
      •
      Apache License 2.0
      •4•6•0•0•Updated Jul 15, 2023Jul 15, 2023
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