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@OHDSI Observational Health Data Sciences and Informatics

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    321 repositories

    • ConceptSetDiagnostics

      Public
      Package to assist with design diagnostics for concept set
      R
      •
      Other
      •1•0•1•0•Updated Mar 5, 2025Mar 5, 2025

    • TheBookOfOhdsiInJapanese

      Public
      A translation of https://github.com/OHDSI/TheBookOfOhdsi into Japanese
      R
      •
      Creative Commons Zero v1.0 Universal
      •4•1•0•0•Updated Mar 5, 2025Mar 5, 2025

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •16•16•0•1•Updated Mar 4, 2025Mar 4, 2025

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •1•1•11•0•Updated Mar 4, 2025Mar 4, 2025

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •141•277•213•18•Updated Mar 4, 2025Mar 4, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •170•135•128•23•Updated Mar 4, 2025Mar 4, 2025

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•1•7•0•Updated Mar 4, 2025Mar 4, 2025

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•11•1•Updated Mar 4, 2025Mar 4, 2025

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•232•200•12•Updated Mar 4, 2025Mar 4, 2025

    • Characterization

      Public
      Various types of characterizations of a target and outcome cohort.
      R
      •5•3•6•4•Updated Mar 4, 2025Mar 4, 2025

    • FeatureExtraction

      Public
      An R package for generating features (covariates) for a cohort using data in the Common Data Model.
      hades
      R
      •60•62•44•7•Updated Mar 4, 2025Mar 4, 2025

    • CohortDiagnostics

      Public
      An R package for performing various cohort diagnostics.
      hades
      R
      •50•43•29•2•Updated Mar 4, 2025Mar 4, 2025

    • Strategus

      Public
      An R package for coordinating and executing analytics using HADES modules
      R
      •11•6•20•5•Updated Mar 3, 2025Mar 3, 2025

    • DatabaseConnector

      Public
      An R package for connecting to databases using JDBC.
      hades
      R
      •85•56•35•2•Updated Mar 3, 2025Mar 3, 2025

    • CohortSymmetry

      Public
      R
      •
      Apache License 2.0
      •0•1•21•0•Updated Mar 1, 2025Mar 1, 2025

    • GIS

      Public
      R
      •
      Apache License 2.0
      •9•11•72•2•Updated Feb 28, 2025Feb 28, 2025

    • DeepPatientLevelPrediction

      Public
      An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
      hadesdeep-learning
      R
      •4•12•26•1•Updated Feb 28, 2025Feb 28, 2025

    • Polites

      Public
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Feb 27, 2025Feb 27, 2025

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•15•0•Updated Feb 27, 2025Feb 27, 2025

    • OhdsiReportGenerator

      Public
      Code to extract data from the OHDSI results structure and generate plots, presentations and reports
      R
      •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

    • AthenaUI

      Public
      UI of web application for distributing and browsing the Standardized Vocabularies for the OMOP CDM
      TypeScript
      •3•6•4•27•Updated Feb 26, 2025Feb 26, 2025

    • Athena

      Public
      Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
      Java
      •19•60•54•7•Updated Feb 26, 2025Feb 26, 2025

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•2•2•Updated Feb 26, 2025Feb 26, 2025

    • Achilles

      Public
      Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
      R
      •124•135•52•5•Updated Feb 26, 2025Feb 26, 2025

    • EvidenceSynthesis

      Public
      An R package for combining evidence from multiple sources (e.g. multiple data sites)
      hades
      R
      •8•8•3•0•Updated Feb 26, 2025Feb 26, 2025

    • ResultModelManager

      Public
      RMM is an R package designed to handle common ohdsi results data management functions by providing a common API for data model migrations and definitions
      R
      •
      Apache License 2.0
      •3•4•12•1•Updated Feb 25, 2025Feb 25, 2025

    • SkeletonCohortCharacterization

      Public
      Java
      •
      Apache License 2.0
      •3•2•5•5•Updated Feb 25, 2025Feb 25, 2025

    • ShinyProxyDeploy

      Public
      Deploy OHDSI Shiny apps to results.ohdsi.org
      3•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • PhenotypePhebruary2025

      Public
      Dockerfile
      •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025