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@OHDSI Observational Health Data Sciences and Informatics

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    318 repositories

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•1•25•1•Updated Dec 13, 2024Dec 13, 2024

    • ETL-Synthea

      Public
      A package supporting the conversion from Synthea CSV to OMOP CDM
      etl
      R
      •73•99•2•0•Updated Dec 13, 2024Dec 13, 2024

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •7•12•37•4•Updated Dec 13, 2024Dec 13, 2024

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•1•20•2•Updated Dec 13, 2024Dec 13, 2024

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •15•14•1•2•Updated Dec 13, 2024Dec 13, 2024

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•223•222•10•Updated Dec 13, 2024Dec 13, 2024

    • CohortGenerator

      Public
      Cohort Generation for the OMOP Common Data Model
      hades
      R
      •10•12•18•3•Updated Dec 12, 2024Dec 12, 2024

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•9•0•Updated Dec 12, 2024Dec 12, 2024

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •89•188•34•2•Updated Dec 12, 2024Dec 12, 2024

    • CureIdRegistry

      Public
      TSQL
      •9•14•3•3•Updated Dec 11, 2024Dec 11, 2024

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•39•3•Updated Dec 11, 2024Dec 11, 2024

    • Characterization

      Public
      Various types of characterizations of a target and outcome cohort.
      R
      •5•3•5•5•Updated Dec 11, 2024Dec 11, 2024

    • MethodEvaluation

      Public
      An R package for the evaluation of estimation methods
      hades
      R
      •5•7•2•0•Updated Dec 11, 2024Dec 11, 2024

    • context

      Public
      A python library to create knowledge graphs for context-aware prediction modeling and more
      0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • CohortExplorer

      Public
      An R package with a Shiny viewer to explore profiles of patients in a cohort
      R
      •3•3•0•1•Updated Dec 11, 2024Dec 11, 2024

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •8•17•17•3•Updated Dec 11, 2024Dec 11, 2024

    • Strategus

      Public
      An R package for coordinating and executing analytics using HADES modules
      R
      •11•6•20•5•Updated Dec 10, 2024Dec 10, 2024

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •169•131•131•24•Updated Dec 10, 2024Dec 10, 2024

    • DeepPatientLevelPrediction

      Public
      An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
      hadesdeep-learning
      R
      •4•12•22•2•Updated Dec 10, 2024Dec 10, 2024

    • webapi-shiny

      Public
      [Under development] Holds dependencies for WebAPI Shiny apps
      R
      •
      Apache License 2.0
      •0•1•0•0•Updated Dec 10, 2024Dec 10, 2024

    • OhdsiShinyAppBuilder

      Public
      A package that lets you build an interactive results viewer for one or more type of OHDSI analysis
      R
      •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • TAB

      Public
      OHDSI Open Source Technical Advisory Board
      2•4•3•0•Updated Dec 9, 2024Dec 9, 2024

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •138•275•214•20•Updated Dec 9, 2024Dec 9, 2024

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•2•2•Updated Dec 9, 2024Dec 9, 2024

    • CommunityDashboard

      Public
      Dashboard to monitor the health of the OHDSI community. A Flask app of Dash Dashboards for tracking public API's
      TypeScript
      •
      Apache License 2.0
      •1•6•11•0•Updated Dec 9, 2024Dec 9, 2024

    • gaiaDB

      Public
      A staging database and collection of transformation recipes for public place-based datasets
      Python
      •0•1•37•0•Updated Dec 9, 2024Dec 9, 2024

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Dec 6, 2024Dec 6, 2024

    • Keeper

      Public
      A tool to support case validation
      R
      •0•1•0•0•Updated Dec 6, 2024Dec 6, 2024

    • d2e

      Public
      [Under development] D2E is an end-to-end solution for management of OMOP data
      Apache License 2.0
      •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • OhdsiReportGenerator

      Public
      Code to extract data from the OHDSI results structure and generate plots, presentations and reports
      0•0•0•0•Updated Dec 5, 2024Dec 5, 2024