Repositories list

• CAPTND

  Public
  A patient-level dataset for outpatient mental health in Scotland.

  R

  •0•2•0•0•Updated Feb 24, 2025Feb 24, 2025

• source-linkage-files

  Public
  This repo is for the syntax used for the PHS Source Linkage File project

  rr-package

  Scheme

  •

  Other

  •2•5•30•2•Updated Feb 24, 2025Feb 24, 2025

• phsopendata

  Public
  Functions to extract and interact with data from the Scottish Health and Social Care Open Data platform.

  r-package

  R

  •3•10•4•2•Updated Feb 23, 2025Feb 23, 2025

• phstemplates

  Public
  Standard R templates and project structure for Public Health Scotland (https://public-health-scotland.github.io/phstemplates/)

  templaterstudiormarkdown+ 2r-packagermarkdown-template

  R

  •

  Other

  •7•20•4•1•Updated Feb 23, 2025Feb 23, 2025

• slfhelper

  Public
  An R package for working with the SLFs

  rr-package

  R

  •

  Other

  •1•6•10•1•Updated Feb 23, 2025Feb 23, 2025

• scotpho-indicator-production

  Public
  Code used to prepare data for indicators in ScotPHO's profiles

  public-healthdata-manipulationhealth-data

  R

  •1•9•0•11•Updated Feb 21, 2025Feb 21, 2025

• sdcshinyapp

  Public
  Shiny App for performing Statistical Disclosure Control (SDC)

  R

  •1•0•1•0•Updated Feb 21, 2025Feb 21, 2025

• dementia-pds

  Public
  Reproducible Analytical Pipeline (RAP) for Dementia Post-Diagnostic Support (PDS) management reports and publication.

  rap

  R

  •1•3•3•1•Updated Feb 21, 2025Feb 21, 2025

• AAA-KPIs

  Public
  cancer

  R

  •0•2•21•0•Updated Feb 20, 2025Feb 20, 2025

• scotpho-profiles-app

  Public
  Code behind re-development of online ScotPHO profiles shiny app

  R

  •0•7•3•3•Updated Feb 20, 2025Feb 20, 2025

• list-localities-profiles

  Public
  R

  •

  MIT License

  •1•1•27•10•Updated Feb 20, 2025Feb 20, 2025

• posit-workbench-job-scheduler

  Public
  Functions to assist with programmatically launching Workbench Jobs on the Kubernetes cluster, and scheduling these to run a specific time.

  R

  •3•5•14•0•Updated Feb 19, 2025Feb 19, 2025

• dose_instruction_parser

  Public
  Parsing prescription dose instructions using Named Entity Recognition and rules

  machine-learningnatural-language-processingspacy+ 8named-entity-recognitionpublic-healthdrugnhsscotlandprescriptionsdose-instructions+ 1

  Python

  •

  MIT License

  •0•3•0•0•Updated Feb 18, 2025Feb 18, 2025

• actions

  Public
  0•0•0•1•Updated Feb 17, 2025Feb 17, 2025

• python-training

  Public
  An interactive, online introduction to python training for employees in Public Health Scotland.

  CSS

  •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• calculation-of-wait

  Public
  R

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• covid-19_respiratory_surveillance_dashboard

  Public
  A Public Health Scotland R shiny app for surveillance of COVID-19 and respiratory illnesses in Scotland

  appdashboardshiny+ 5surveillancepublic-healthscotlandrespiratorycovid-19

  R

  •0•8•1•2•Updated Feb 13, 2025Feb 13, 2025

• ScotPHO_survey_data

  Public
  Code for extracting survey data from UK Data Service/Archive microdata files and processing for the ScotPHO online profiles app.

  R

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• sot-dq-questions

  Public
  R

  •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• phslookups

  Public
  PHS Lookups

  r-package

  R

  •

  Other

  •0•0•4•3•Updated Feb 12, 2025Feb 12, 2025

• AAA-quarterly-extract

  Public
  cancer

  R

  •0•1•6•1•Updated Feb 12, 2025Feb 12, 2025

• MHQI-Dashboard

  Public
  The Mental Health Team's repo for the Mental Health Quality Indicators Dashboard

  R

  •

  MIT License

  •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

• phsmethods

  Public
  An R package to standardise methods used in Public Health Scotland (https://public-health-scotland.github.io/phsmethods/)

  r-package

  R

  •13•55•12•5•Updated Feb 10, 2025Feb 10, 2025

• AAA-rupture-audit

  Public
  cancer

  R

  •0•0•0•1•Updated Feb 10, 2025Feb 10, 2025

• learn-git

  Public
  0•10•0•3•Updated Feb 6, 2025Feb 6, 2025

• Hospital-Acute-Activity

  Public
  Code to create Public Health Scotland's Hospital Acute Care Activity publication

  R

  •3•15•0•0•Updated Feb 6, 2025Feb 6, 2025

• SPBAND

  Public
  Code to produce the Scottish Pregnancy, Births and Neonatal Data dashboard (SPBAND)

  birthsstillbirthsinfant-deaths+ 5pregnanciesterminationsperineal-tearsapgar5-scoregestation

  R

  •2•3•0•0•Updated Feb 5, 2025Feb 5, 2025

• scotpho-website-updates

  Public
  Code used to prepare data for ScotPHO's website

  R

  •0•1•0•0•Updated Feb 3, 2025Feb 3, 2025

• vacc-dq-reporting

  Public
  Repository for data quality reporting by the PHS Data Management Vaccines team.

  R

  •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• scotpho-lookups

  Public
  Preparing geography and population lookups used to produce indicator data

  populationgeography

  R

  •0•2•0•0•Updated Jan 30, 2025Jan 30, 2025