Repositories list

• rbatools

  Public
  Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. This is version 1.0.3

  bioinformaticssystems-biologyresource-allocation+ 7biotechnologyconstraint-based-modelingwhole-cell-modelinggenome-scale-modelspythonsimulationmodeling

  Python

  •

  GNU General Public License v3.0

  •2•2•0•0•Updated Jun 7, 2023Jun 7, 2023

• RBApy

  Public
  Python package for creating, calibrating and simulating RBA models

  Python

  •

  GNU General Public License v3.0

  •10•11•11•0•Updated Jun 5, 2023Jun 5, 2023

• Bacterial-RBA-models

  Public
  RBA models created by RBApy

  Python

  •

  Other

  •4•4•0•0•Updated Mar 7, 2023Mar 7, 2023

• bipsim

  Public
  Gillespie-based simulator of biochemical processes

  C++

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Apr 18, 2021Apr 18, 2021

• Reconstruction-of-censored-trajectories

  Public
  We consider particles trajectories following birth and death processes as well as Browian motion with drift. These trajectories are observed on a subregion of the region where they lye. We aim to recognize if some of tracklets observed could connected through the unobserved region.

  1•0•0•0•Updated Jul 8, 2020Jul 8, 2020

• SysOnto

  Public
  Systemic ontologies

  0•0•0•0•Updated Jun 26, 2020Jun 26, 2020