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    37 repositories

    • mlr-challenges-frankenbody

      Public
      Bayer's MLR antibody data modelling challenge
      Python
      •1•3•0•0•Updated Sep 3, 2024Sep 3, 2024

    • ColabFold

      Public
      Making Protein folding accessible to all!
      Jupyter Notebook
      •
      MIT License
      •479•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • topefind-public

      Public
      Finding the pitfalls of deep learning predictors of interacting residues in antibodies 🦠
      deep-learningneural-networkbiologyartificial-intelligenceproteinantibodies
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•22•2•0•Updated Jun 10, 2024Jun 10, 2024

    • qupath-feedstock

      Public
      A conda-smithy repository for qupath.
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•4•Updated Mar 2, 2024Mar 2, 2024

    • Img2Mol

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •41•108•1•0•Updated Mar 24, 2023Mar 24, 2023

    • abbert-cerebras

      Public
      Python
      •0•6•1•0•Updated Feb 16, 2023Feb 16, 2023

    • cerebras-modelzoo-bayer

      Public
      Fork of cerebras' model zoo to include Bayer-specific changes
      Python
      •
      Apache License 2.0
      •128•0•0•0•Updated Dec 6, 2022Dec 6, 2022

    • pege

      Public
      Protein Environment Graph Embeddings
      Python
      •1•7•0•0•Updated Nov 29, 2022Nov 29, 2022

    • context-matters

      Public
      It does.
      0•0•0•0•Updated Nov 8, 2022Nov 8, 2022

    • typedb-pytorch-example

      Public
      Grakn + Pytorch Geometric
      Python
      •0•0•0•0•Updated Nov 8, 2022Nov 8, 2022

    • typedb-pytorch-geometric

      Public
      Python
      •0•0•0•0•Updated Nov 8, 2022Nov 8, 2022

    • openfold

      Public
      Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
      Python
      •
      Apache License 2.0
      •518•3•0•0•Updated Nov 4, 2022Nov 4, 2022

    • abfe-benchmark

      Public
      Jupyter Notebook
      •
      MIT License
      •0•9•3•0•Updated Nov 3, 2022Nov 3, 2022

    • HistoQC

      Public
      HistoQC is an open-source quality control tool for digital pathology slides
      Python
      •
      BSD 3-Clause Clear License
      •105•0•0•0•Updated Jul 20, 2022Jul 20, 2022

    • prettymol

      Public
      Charming molecules
      Python
      •
      Other
      •0•0•2•0•Updated Mar 22, 2022Mar 22, 2022

    • contrastive-reconstruction

      Public
      Tensorflow-keras implementation for Contrastive Reconstruction (ConRec) : a self-supervised learning algorithm that obtains image representations by jointly optimizing a contrastive and a self-reconstruction loss.
      kerasself-supervised-learningtensorflow2simclrtoy-datasetconrecattention-poolingfinegrainedrepresenation-learning
      Python
      •
      GNU General Public License v3.0
      •3•13•1•0•Updated Feb 22, 2022Feb 22, 2022

    • mtpcm

      Public
      Multi-task Proteochemometric Modelling
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 14, 2022Feb 14, 2022

    • hbond-benchmark

      Public
      Adding H-donor-acceptor bonds to GNNs
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Jan 27, 2022Jan 27, 2022

    • data2text-bioleaflets

      Public
      Biomedical Data-to-Text Generation via Fine-Tuning Transformers
      transformersnlp-machine-learningbiomedical-text-miningdata-to-text
      Python
      •
      Apache License 2.0
      •3•29•0•0•Updated Dec 20, 2021Dec 20, 2021

    • typedb-loader

      Public
      TypeDB Loader -Data Migration Tool for TypeDB
      Java
      •
      Apache License 2.0
      •17•0•0•0•Updated Nov 22, 2021Nov 22, 2021

    • molnet-geometric-lightning

      Public template
      MoleculeNet Benchmarks in Pytorch Lightning with Torch Geometirc
      Jupyter Notebook
      •
      MIT License
      •1•4•0•1•Updated Oct 28, 2021Oct 28, 2021

    • eh-benchmark

      Public
      Boosting GNN performance with lightweight QM features
      Python
      •
      MIT License
      •0•2•0•0•Updated Oct 28, 2021Oct 28, 2021

    • XAI4Embeddings

      Public
      Python
      •0•1•0•0•Updated Oct 5, 2021Oct 5, 2021

    • pKAI

      Public
      pKAI: a fast and interpretable deep learning approach to accurate electrostatics-driven pKa prediction
      Python
      •
      MIT License
      •8•27•0•0•Updated Sep 16, 2021Sep 16, 2021

    • phc-gnn

      Public
      Implementation of the Paper: "Parameterized Hypercomplex Graph Neural Networks for Graph Classification" by Tuan Le, Marco Bertolini, Frank Noé and Djork-Arné Clevert
      deep-learningquaterniongraph-classificationneural-message-passinggraph-neural-networksgraph-representation-learninghypercomplex
      Python
      •
      GNU General Public License v3.0
      •6•30•1•0•Updated Sep 3, 2021Sep 3, 2021

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.2k•0•0•0•Updated Jul 20, 2021Jul 20, 2021

    • graph-attribution

      Public
      Codebase for Evaluating Attribution for Graph Neural Networks.
      Jupyter Notebook
      •
      Apache License 2.0
      •16•8•0•0•Updated May 31, 2021May 31, 2021

    • mtnngc_admet

      Public
      Python
      •
      Other
      •1•3•0•0•Updated Apr 23, 2021Apr 23, 2021

    • beehive

      Public
      Side project for helping beekeepers. Segment and classify honeycomb pictures to find out how many larvae, eggs, nectar, etc are in the brood.
      Python
      •1•1•0•0•Updated Apr 9, 2021Apr 9, 2021

    • grami-example

      Public
      Example project showing how to use GraMi
      Java
      •0•3•1•0•Updated Feb 19, 2021Feb 19, 2021