Repositories list

• pcadapt

  Public
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4

  R

  •10•38•3•0•Updated Sep 24, 2024Sep 24, 2024

• hdmax2

  Public
  High dimensional mediation analysis with max-squared tests

  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• hadaca3

  Public
  R

  •0•0•19•0•Updated Sep 3, 2024Sep 3, 2024

• LEA

  Public
  C

  •7•9•0•0•Updated Aug 8, 2024Aug 8, 2024

• geneticgap

  Public
  Repository related to "A quantitative theory for genomic offset statistics"

  HTML

  •0•4•0•0•Updated Jun 12, 2024Jun 12, 2024

• penda

  Public
  PenDA is a rank-based method for personalized differential analysis.

  bioinformaticsgenomicsrnaseq+ 2bioinformatics-tooldifferential-analysis

  R

  •4•7•0•0•Updated Mar 27, 2024Mar 27, 2024

• tuto-ssh

  Public
  How to work on BCM servers (krakenator, luxor) from home?

  0•1•0•0•Updated Jan 31, 2024Jan 31, 2024

• gedepir

  Public
  Gene Expression DEconvolution PIpeline in R

  HTML

  •0•1•0•0•Updated Dec 7, 2023Dec 7, 2023

• dmprocr

  Public
  An R package that performs differential methylation profiles clustering.

  R

  •2•0•0•0•Updated Jul 6, 2023Jul 6, 2023

• TESS3_encho_sen

  Public
  TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix factorization and population genetics.

  R

  •

  GNU General Public License v3.0

  •6•18•9•0•Updated Jun 21, 2023Jun 21, 2023

• Loter

  Public
  A software package for local ancestry inference and haplotype phasing

  C++

  •

  Other

  •7•38•3•0•Updated Apr 20, 2023Apr 20, 2023

• SSMPG2022

  Public
  Resources for Software and Statistical Methods for Population Genetics (SSMPG 2022)

  HTML

  •5•6•0•0•Updated Sep 28, 2022Sep 28, 2022

• HDMAX2_Simulation_Scripts

  Public
  Scripts reproducing results presented in High Dimensional Mediation Analysis: a new method applied to maternal smoking, placental DNA methylation and birth outcomes (Jumentier et al. 2022)

  HTML

  •0•0•0•0•Updated Sep 13, 2022Sep 13, 2022

• Ritmic

  Public
  R

  •0•0•0•0•Updated Jun 8, 2022Jun 8, 2022

• LEA3_simulation_script

  Public
  Scripts and data sets reproducing the results presented in (Gain & François, 2020)

  R

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Oct 29, 2021Oct 29, 2021

• scripts_sagmb

  Public
  R scripts for Jumentier et al. 2021

  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Aug 22, 2021Aug 22, 2021

• spectralfst

  Public
  A package to compute values and matrices of interest described in the paper "A Spectral Theory for Wright’s Inbreeding Coefficients and Related Quantities" François et Gain 2020

  0•0•0•0•Updated May 11, 2021May 11, 2021

• medepir

  Public
  MEthylation DEconvoluation PIpeline in R

  R

  •3•3•0•0•Updated Oct 15, 2020Oct 15, 2020

• tfa

  Public
  Factor analysis of ancient DNA samples

  R

  •

  GNU General Public License v3.0

  •1•2•2•0•Updated Aug 27, 2020Aug 27, 2020

• lfmm

  Public
  Fitting latent factor mixed models

  R

  •

  GNU General Public License v3.0

  •0•12•12•0•Updated Jun 12, 2020Jun 12, 2020

• NaturalGWAS

  Public
  R package for the special issue "MER - Natural GWAS"

  HTML

  •1•3•0•0•Updated Dec 10, 2019Dec 10, 2019

• bcm-uga.github.io

  Public
  Template for creating your website with R markdown.

  HTML

  •338•0•0•0•Updated Oct 10, 2019Oct 10, 2019

• apTreeshape

  Public
  R

  •0•1•1•0•Updated Sep 25, 2019Sep 25, 2019

• abc

  Public
  R package for Approximate Bayesian Computation

  R

  •1•0•1•0•Updated May 10, 2019May 10, 2019

• isd

  Public
  Ressources pour les travaux pratiques d'introduction à la science des données

  R

  •0•0•0•0•Updated Jul 5, 2018Jul 5, 2018

• dmprocrdata

  Public
  A set of data dedicated to the dmprocr R package.

  R

  •3•0•0•0•Updated May 23, 2018May 23, 2018

• xgboostforabc

  Public
  R Scripts to perform ABC using xgboost

  HTML

  •0•0•0•0•Updated Feb 6, 2018Feb 6, 2018

• SSMPG2017

  Public
  Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)

  HTML

  •13•14•0•0•Updated Sep 19, 2017Sep 19, 2017

• IC-Finder

  Public
  Segmentations of HiC maps into hierarchical interaction compartments

  1•1•0•0•Updated Aug 8, 2017Aug 8, 2017

• pendadata

  Public
  A set of data dedicated to the penda R package.

  R

  •1•0•0•0•Updated Aug 4, 2017Aug 4, 2017