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ibaqpy
PublicAbsolute quantification package based on quantms.ioquantms
PublicQuantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.quantms-utils
PublicA python library with scripts and helpers classes for quantms workflowquantms-rescoring
Publicquantms.io
Publicmultiomics-configs
Publicdiann-docker
Publicspectrafuse
Publicpmultiqc
Publichvantk
Publicsdrf-pipelines
PublicA repository to convert SDRF proteomics files into pipelines config files- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
pgatk-io
Public archiveHigh performance io library for proteogenomicsfslite
PublicLightweight Feature selection Python libraryDLEAMSE
Publicsdrf-utils
Publicpyspectrafuse
Publicpgt-pangenome
PublicProtegenomics analysis based on Pangenome referencespy-pgatk
PublicPython tools for proteogenomics analysis toolkitquantms.org
Publicmsgfplus
PublicMS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.mad_decoy
Publictdf2mzml
Publicopenmsrescore
Publicqccalculator
Publicsage
PubliclucXor
PublicJAVA-based implementation of LuciPHOr that can process any variable PTM.pia
Publicsparkms
PublicSpark package to perform downstream analysis of big data proteomics