Skip to content

@broadinstitute Broad Institute

Change the repository type filter

All

    Repositories list

    1.3k repositories

    • starrynight

      Public
      Library and tools to process cell painting images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•2•Updated Jan 7, 2025Jan 7, 2025

    • heimdall

      Public
      Shell
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • gatk

      Public
      Official code repository for GATK versions 4 and up
      sciencebioinformaticsgenomicsgenomengssequencingdnasparkgatk
      Java
      •
      Other
      •596•1.7k•1.2k•135•Updated Jan 7, 2025Jan 7, 2025

    • ml4h_mgh_dcr

      Public
      code for ML4H-MGH DCR collaboration
      Python
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • tgg-viewer

      Public
      A free, open-source web app for visualizing splice junctions, expression, and other sequencing data genome-wide using IGV.js
      JavaScript
      •
      MIT License
      •1•4•0•3•Updated Jan 7, 2025Jan 7, 2025

    • BEClust3D

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•8•Updated Jan 7, 2025Jan 7, 2025

    • 2024-09-27-python-intro-lesson

      Public
      Based on https://github.com/librarycarpentry/lc-python-intro/
      HTML
      •
      Other
      •1•0•0•1•Updated Jan 7, 2025Jan 7, 2025

    • 2024-09-20-unix-shell-lesson

      Public
      Based on https://github.com/datacarpentry/shell-genomics/
      R
      •
      Other
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • PTA_Analysis

      Public
      WDL
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • 2024-06-24-python-novice-lesson

      Public
      based on https://swcarpentry.github.io/python-novice-inflammation/
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • sam

      Public
      workbench identity and access management
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •12•42•3•31•Updated Jan 6, 2025Jan 6, 2025

    • puppet-sentinelone_agent

      Public
      Puppet module to manage the SentinelOne agent
      Ruby
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•1•0•Updated Jan 6, 2025Jan 6, 2025

    • backstage

      Public
      Broad Institute Engineering Portal is an Internal Developer Platform (Spotify Backstage by another name)
      TypeScript
      •0•2•1•2•Updated Jan 6, 2025Jan 6, 2025

    • ygramul

      Public
      Hierarchical knowledge graph for PIGEAN results
      Rust
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • celldega

      Public
      Spatial omics analysis and visualization library
      Jupyter Notebook
      •
      Other
      •0•3•1•6•Updated Jan 6, 2025Jan 6, 2025

    • juniper

      Public
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •5•9•0•8•Updated Jan 6, 2025Jan 6, 2025

    • depmap-portal

      Public
      Code for the DepMap portal at depmap.org
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•7•0•6•Updated Jan 6, 2025Jan 6, 2025

    • python-cert_manager

      Public
      Python interface to the Sectigo Certificate Manager REST API
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•37•2•1•Updated Jan 6, 2025Jan 6, 2025

    • rawls

      Public
      Rawls service for DSDE
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •4•26•0•11•Updated Jan 6, 2025Jan 6, 2025

    • gnomad-browser

      Public
      Explore gnomAD datasets on the web
      javascriptgenomicsgnomad
      TypeScript
      •
      MIT License
      •45•81•156•17•Updated Jan 6, 2025Jan 6, 2025

    • taigapy

      Public
      Library for reading from taiga in python
      Python
      •1•1•2•3•Updated Jan 6, 2025Jan 6, 2025

    • seqr

      Public
      web-based analysis tool for rare disease genomics
      Python
      •
      GNU Affero General Public License v3.0
      •89•179•47•5•Updated Jan 6, 2025Jan 6, 2025

    • gatk-sv

      Public
      A structural variation pipeline for short-read sequencing
      bioinformaticsgenomicsstructural-variationstructural-variants
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •71•175•74•26•Updated Jan 6, 2025Jan 6, 2025

    • warp

      Public
      WDL Analysis Research Pipelines
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •99•207•7•24•Updated Jan 6, 2025Jan 6, 2025

    • python-sudoers

      Public
      Python library for parsing a Linux sudoers file
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•7•2•3•Updated Jan 6, 2025Jan 6, 2025

    • mitograph

      Public
      Rust
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • carmen-analysis

      Public
      Python
      •
      MIT License
      •0•3•0•0•Updated Jan 6, 2025Jan 6, 2025

    • cromwell

      Public
      Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
      dockerapplicationcloudbioinformaticsscalaexecutorhpccontainerswdlga4gh
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •359•1k•745•48•Updated Jan 6, 2025Jan 6, 2025

    • TAG-public

      Public
      Official workflows published by the Broad Institute's Genomics Platform Translation Analysis Group (TAG)
      WDL
      •3•5•1•16•Updated Jan 6, 2025Jan 6, 2025

    • dsp-reusable-workflows

      Public
      publicly available reusable workflows
      Python
      •0•1•0•3•Updated Jan 6, 2025Jan 6, 2025