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    58 repositories

    • python-genomespaceclient

      Public archive
      A Python client for the GenomeSpace API
      Python
      •
      MIT License
      •3•1•0•0•Updated Oct 2, 2021Oct 2, 2021

    • gvl-keycloak-theme

      Public
      A keycloak theme for the GVL
      JavaScript
      •1•0•0•2•Updated Mar 17, 2021Mar 17, 2021

    • galaxy

      Public
      Data intensive biology for everyone.
      Python
      •
      Other
      •1k•0•0•2•Updated Feb 5, 2021Feb 5, 2021

    • cloudlaunch

      Public
      Easily launch your own cloud servers for use with Galaxy and CloudMan
      Python
      •37•0•0•0•Updated Nov 23, 2020Nov 23, 2020

    • tools-iuc

      Public
      Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
      HTML
      •
      MIT License
      •430•0•0•0•Updated Aug 13, 2019Aug 13, 2019

    • gvl-helm

      Public
      A helm chart for the Genomics Virtual Lab
      MIT License
      •0•0•0•0•Updated Jun 19, 2019Jun 19, 2019

    • ansible-galaxy

      Public
      An Ansible role for managing a Galaxy (http://galaxyproject.org) server.
      Python
      •75•0•0•0•Updated May 31, 2019May 31, 2019

    • gvl_commandline_utilities

      Public
      Scripts for users of GVL cloud instances. These scripts configure GVL servers as command line bioinformatics platforms.
      Python
      •
      MIT License
      •9•11•3•0•Updated May 22, 2019May 22, 2019

    • ephemeris

      Public
      Library for managing Galaxy plugins - tools, index data, and workflows.
      Python
      •
      Other
      •38•0•0•0•Updated Feb 25, 2019Feb 25, 2019

    • training-material

      Public
      A collection of training material from offered Galaxy courses
      HTML
      •
      Other
      •899•1•0•0•Updated Feb 21, 2019Feb 21, 2019

    • galaxy-tools

      Public
      Some DeVL/GVL tools for Galaxy.
      R
      •
      MIT License
      •0•1•0•1•Updated Jan 18, 2019Jan 18, 2019

    • gvl.ansible.playbook

      Public
      Playbook for building the Genomics Virtual Laboratory
      4•7•42•0•Updated Dec 3, 2018Dec 3, 2018

    • ansible-cvmfs

      Public
      An Ansible role for installing and configuring CernVM-FS (CVMFS)
      C
      •17•0•0•0•Updated Oct 11, 2018Oct 11, 2018

    • gvl.ansible.filesystem

      Public
      Ansible role for the Genomics Virtual Lab filesystem
      Python
      •
      MIT License
      •3•2•2•0•Updated Oct 10, 2018Oct 10, 2018

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.3k•0•0•0•Updated Aug 22, 2018Aug 22, 2018

    • gvl.utilities

      Public
      A miscellaneous assortment of administrative utilities for the GVL
      Python
      •0•0•0•0•Updated Aug 8, 2018Aug 8, 2018

    • ansible-galaxy-tools

      Public
      An Ansible role for automated installation of tools from a Tool Shed into Galaxy.
      Python
      •
      MIT License
      •34•0•0•0•Updated Aug 2, 2018Aug 2, 2018

    • ansible-cloudman-galaxy-setup

      Public
      This role is used to setup Galaxy for use with CloudMan.
      HTML
      •
      MIT License
      •5•0•0•0•Updated Aug 2, 2018Aug 2, 2018

    • ansible-cloudman-database

      Public
      An Ansible role for setting up PostgreSQL database for use with Galaxy CloudMan.
      MIT License
      •2•0•0•0•Updated Aug 2, 2018Aug 2, 2018

    • ansible-cloudman-image

      Public
      An Ansible role for building a machine image for CloudMan.
      Python
      •
      MIT License
      •5•0•0•0•Updated Aug 2, 2018Aug 2, 2018

    • ansible-pulsar

      Public
      An Ansible role for managing a Pulsar (https://github.com/galaxyproject/pulsar) server.
      11•0•0•0•Updated Jun 12, 2018Jun 12, 2018

    • infrastructure-playbook

      Public
      Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
      Shell
      •
      MIT License
      •95•0•0•0•Updated May 29, 2018May 29, 2018

    • gvl-website-markdown

      Public
      GVL website content in markdown format
      2•1•3•0•Updated Apr 26, 2018Apr 26, 2018

    • gvldash

      Public
      GVL Dashboard
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Apr 1, 2018Apr 1, 2018

    • gvl.ansible.filesystem.presetup

      Public
      An ansible role required by the gvl.ansible.filesystem role.
      MIT License
      •0•0•0•0•Updated Mar 31, 2018Mar 31, 2018

    • gvl.ansible.image

      Public
      Ansible role for building the GVL machine image.
      Shell
      •
      MIT License
      •0•3•0•0•Updated Mar 29, 2018Mar 29, 2018

    • gvl.ansible.irida

      Public
      Ansible script to install the PHAC's IRIDA project into the GVL.
      Python
      •0•2•0•0•Updated Mar 26, 2018Mar 26, 2018

    • gvl.ansible.web_apollo

      Public
      Ansible to install Web Apollo in a GVL instance
      Shell
      •1•0•0•0•Updated Mar 26, 2018Mar 26, 2018

    • gvl.ansible.smrt_analysis

      Public
      Ansible scripts for setting up the smrt analysis portal on a GVL
      4•0•3•0•Updated Mar 26, 2018Mar 26, 2018

    • gvl.ansible.pancancer.bwamem

      Public
      This ansible playbook is executed by the GVL to install the BWA-Mem workflow from the ICGC PanCancer Analysis of Whole Genomes (PCAWG) project.
      Shell
      •
      MIT License
      •0•0•0•0•Updated Mar 26, 2018Mar 26, 2018