Skip to content

@jmf-vienna Joint Microbiome Facility (JMF)

Change the repository type filter

All

    Repositories list

    9 repositories

    • amplicon-post-clust

      Public
      JMF amplicon analysis pipeline: post clustering processing
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • amplicon-swarm

      Public
      JMF amplicon clustering pipeline using swarm
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • amplicon-analysis

      Public
      JMF amplicon analysis pipeline
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • amplicon-demux

      Public
      JMF amplicon demultiplexing pipeline
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 17, 2025Mar 17, 2025

    • ONT-AmpSeq

      Public archive
      Snakemake workflow to generate OTU tables from barcoded ONT data
      Python
      •
      MIT License
      •3•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • amplicon-classify

      Public
      JMF amplicon analysis pipeline: taxonomic classification
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • workflows

      Public
      This repository contains dependency-independent workflows that can be shared and used on Joint Microbiome Facility generated data.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • jmf-r

      Public
      JMF R utility functions
      r
      R
      •
      Other
      •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • biobakery_workflows

      Public
      Customized bioBakery workflows docker image
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Aug 9, 2022Aug 9, 2022