Repositories list

• MACS

  Public
  MACS -- Model-based Analysis of ChIP-Seq

  pythondnase-seqchip-seq+ 4peak-calleratac-seqpoisson-equationmacs

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •268•713•234•2•Updated Nov 14, 2024Nov 14, 2024

• MACSr

  Public
  MACS3 R/BioC wrapper

  rbioconductorchip-seq+ 1macs

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •4•7•0•0•Updated Sep 20, 2024Sep 20, 2024

• genomics-analysis-pipelines

  Public
  Pipeline codes for analyzing various genomics datasets based on MACS3

  atac-seq-pipelinechip-seq-pipeline

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •8•7•0•0•Updated Jul 8, 2024Jul 8, 2024

• HMMRATAC

  Public
  HMMRATAC peak caller for ATAC-seq data

  Java

  •

  GNU General Public License v3.0

  •23•0•0•0•Updated Mar 7, 2022Mar 7, 2022

• MAESTRO

  Public
  Single-cell Transcriptome and Regulome Analysis Pipeline

  C

  •

  GNU General Public License v3.0

  •77•4•0•0•Updated Mar 2, 2022Mar 2, 2022

• chromap

  Public
  Fast alignment and preprocessing of chromatin profiles

  C++

  •

  MIT License

  •21•0•0•0•Updated Feb 23, 2022Feb 23, 2022

• MACSdata

  Public
  R

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Dec 8, 2020Dec 8, 2020

• MACS3-website

  Public
  Website of MACS3

  Creative Commons Zero v1.0 Universal

  •0•0•1•0•Updated Jun 3, 2020Jun 3, 2020

• MACS3-docs

  Public
  Documentations of MACS3

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jun 3, 2020Jun 3, 2020