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    • A set of SPARQL examples that are used in different SIB resources
      HTML
      Other
      9953Updated Oct 29, 2024Oct 29, 2024
    • SIB course on single cell transcriptomics by mostly using the Seurat pipeline
      R
      Creative Commons Attribution 4.0 International
      377720Updated Oct 29, 2024Oct 29, 2024
    • pratrical crash course on pytorch by reproducing some published biology-related deep-learning models
      Jupyter Notebook
      Creative Commons Attribution 4.0 International
      2900Updated Oct 29, 2024Oct 29, 2024
    • pyrheadb

      Public
      Repository for the Python package intended to facilitate access to Rhea data from Python
      Python
      MIT License
      0100Updated Oct 29, 2024Oct 29, 2024
    • 💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.
      TypeScript
      MIT License
      0340Updated Oct 28, 2024Oct 28, 2024
    • Course website "Introduction to Containers and Snakemake for Reproducible Research"
      Dockerfile
      Creative Commons Attribution 4.0 International
      14400Updated Oct 28, 2024Oct 28, 2024
    • 🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries
      Jupyter Notebook
      MIT License
      0610Updated Oct 28, 2024Oct 28, 2024
    • Collection of bioinformatics training materials
      Python
      Other
      18497710Updated Oct 27, 2024Oct 27, 2024
    • HTML
      Creative Commons Attribution 4.0 International
      0100Updated Oct 27, 2024Oct 27, 2024
    • R
      Creative Commons Attribution 4.0 International
      1210Updated Oct 27, 2024Oct 27, 2024
    • General statistics of Glittr.org. Comes with the manuscript.
      PostScript
      0000Updated Oct 27, 2024Oct 27, 2024
    • HTML
      Creative Commons Attribution 4.0 International
      3100Updated Oct 24, 2024Oct 24, 2024
    • Course website "Docker and Singularity for reproducible research: getting started with containers"
      HTML
      Creative Commons Attribution 4.0 International
      142710Updated Oct 21, 2024Oct 21, 2024
    • epinorm

      Public
      Scripts for processing of disease outbreak records as part of the MOOD project.
      Python
      0210Updated Oct 21, 2024Oct 21, 2024
    • glittr

      Public
      A web application for finding and comparing bioinformatics training materials on GitHub and GitLab
      PHP
      MIT License
      13530Updated Oct 18, 2024Oct 18, 2024
    • A tool to maintain and test your SPARQL examples
      Java
      Other
      92131Updated Oct 17, 2024Oct 17, 2024
    • kgsteward

      Public
      Knwowledge Graph Steward - Command line tool to help manage RDF store (GraphDB)
      Python
      GNU General Public License v3.0
      2501Updated Oct 15, 2024Oct 15, 2024
    • Intermediate Machine Learning course of the Swiss Institute of Bioinformatics
      Jupyter Notebook
      Creative Commons Attribution 4.0 International
      0130Updated Oct 14, 2024Oct 14, 2024
    • Jupyter Notebook
      Creative Commons Attribution 4.0 International
      255841Updated Oct 11, 2024Oct 11, 2024
    • A registry of publicly available datasets on AWS
      Python
      Apache License 2.0
      909000Updated Oct 6, 2024Oct 6, 2024
    • 0000Updated Oct 4, 2024Oct 4, 2024
    • Jupyter Notebook
      Creative Commons Attribution 4.0 International
      153610Updated Sep 30, 2024Sep 30, 2024
    • repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
      Jupyter Notebook
      Creative Commons Attribution 4.0 International
      155460Updated Sep 27, 2024Sep 27, 2024
    • BEAt_DKD

      Public
      R
      0000Updated Sep 27, 2024Sep 27, 2024
    • Collection of OMOP predefined queries.
      R
      GNU General Public License v3.0
      0000Updated Sep 19, 2024Sep 19, 2024
    • Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
      Creative Commons Attribution 4.0 International
      71320Updated Sep 18, 2024Sep 18, 2024
    • Scripts and documentation to deploy the SIB software stack
      Perl
      0100Updated Sep 17, 2024Sep 17, 2024
    • R
      1400Updated Sep 17, 2024Sep 17, 2024
    • SIB First Steps with UNIX course
      2600Updated Sep 12, 2024Sep 12, 2024
    • Hugo pathogens portal theme
      HTML
      MIT License
      0100Updated Sep 11, 2024Sep 11, 2024