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    217 repositories

    • cdis-manifest

      Public
      Manifests tracking service versions to release to each environment
      HTML
      •
      Apache License 2.0
      •9•8•0•185•Updated Jan 29, 2025Jan 29, 2025

    • cloud-automation

      Public
      Automation for standing up Gen3 commons
      gen3
      Shell
      •
      Apache License 2.0
      •68•41•99•95•Updated Jan 29, 2025Jan 29, 2025

    • vadc-data-commons

      Public template
      VADC Gen3 Data Commons repository for gen3 frontend framework
      TypeScript
      •
      Apache License 2.0
      •17•0•0•2•Updated Jan 29, 2025Jan 29, 2025

    • gen3sdk-python

      Public
      Gen3 SDK for Python
      gen3-lib
      Python
      •
      Apache License 2.0
      •24•14•3•20•Updated Jan 29, 2025Jan 29, 2025

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •2•2•0•5•Updated Jan 29, 2025Jan 29, 2025

    • gitops-qa

      Public
      gen3-gitops
      HTML
      •
      Apache License 2.0
      •7•2•0•183•Updated Jan 29, 2025Jan 29, 2025

    • cdis-jenkins-lib

      Public
      Little groovy helper for Jenkins pipelines
      Groovy
      •
      Apache License 2.0
      •3•4•1•4•Updated Jan 29, 2025Jan 29, 2025

    • heal-platform-sdk

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•3•Updated Jan 29, 2025Jan 29, 2025

    • gtex-dictionary

      Public
      Data dictionary to collect GTEx dataset
      gen3-data-dictionary
      Python
      •
      Apache License 2.0
      •2•2•0•4•Updated Jan 29, 2025Jan 29, 2025

    • Viewers

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
      TypeScript
      •
      MIT License
      •3.5k•1•0•42•Updated Jan 28, 2025Jan 28, 2025

    • bdc-data-commons

      Public
      BDC using Gen 3.2
      TypeScript
      •
      Apache License 2.0
      •0•0•0•5•Updated Jan 28, 2025Jan 28, 2025

    • fence

      Public
      AuthN/AuthZ OIDC Service
      gen3
      Python
      •
      Apache License 2.0
      •48•38•3•78•Updated Jan 28, 2025Jan 28, 2025

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •6•2•0•13•Updated Jan 28, 2025Jan 28, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •168•0•0•12•Updated Jan 28, 2025Jan 28, 2025

    • heal-data-commons

      Public
      TypeScript
      •
      Apache License 2.0
      •0•0•0•5•Updated Jan 28, 2025Jan 28, 2025

    • bih-data-commons

      Public
      BIH Data Commons using Gen3.2
      TypeScript
      •
      Apache License 2.0
      •17•2•0•9•Updated Jan 28, 2025Jan 28, 2025

    • commons-frontend-app

      Public template
      Gen3 Data Commons template repository for gen3 frontend framework
      TypeScript
      •
      Apache License 2.0
      •17•4•1•8•Updated Jan 28, 2025Jan 28, 2025

    • docker-nginx

      Public
      Official NGINX Dockerfiles
      Shell
      •
      BSD 2-Clause "Simplified" License
      •1.8k•0•0•1•Updated Jan 28, 2025Jan 28, 2025

    • gen3-workflow

      Public
      Gen3 service for GA4GH TES integration
      Python
      •
      Apache License 2.0
      •0•1•0•8•Updated Jan 28, 2025Jan 28, 2025

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      gen3
      JavaScript
      •
      Apache License 2.0
      •45•29•43•18•Updated Jan 28, 2025Jan 28, 2025

    • prometheus-data-platform

      Public template
      Gen3 based UI for Prometheus Data Platform
      TypeScript
      •
      Apache License 2.0
      •17•0•0•2•Updated Jan 27, 2025Jan 27, 2025

    • orthanc-builder

      Public
      Repo used to build osimis/orthanc docker images, windows installers and OSX packages
      Shell
      •
      GNU Affero General Public License v3.0
      •14•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • dcf-dataservice

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•24•Updated Jan 27, 2025Jan 27, 2025

    • label-boosted-RAG-for-RRG

      Public
      LaB-RAG (Label Boosted Retrieval Augmented Generation): a generalizable framework for captioning using categorical labels as image descriptors.
      Python
      •
      Apache License 2.0
      •0•2•0•6•Updated Jan 27, 2025Jan 27, 2025

    • gen3-qa

      Public
      Integration Tests for Gen3
      JavaScript
      •
      Apache License 2.0
      •4•6•2•16•Updated Jan 27, 2025Jan 27, 2025

    • manifestservice

      Public
      create and read manifests from s3
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Jan 27, 2025Jan 27, 2025

    • indexclient

      Public
      Prototype index service client.
      Python
      •
      Apache License 2.0
      •2•4•4•3•Updated Jan 27, 2025Jan 27, 2025

    • gen3-discovery-ai

      Public
      Gen3 Discovery AI
      Python
      •
      Apache License 2.0
      •0•1•0•14•Updated Jan 27, 2025Jan 27, 2025

    • hatchery

      Public
      hacktoberfestgen3
      Go
      •
      Apache License 2.0
      •4•7•0•8•Updated Jan 27, 2025Jan 27, 2025

    • arborist

      Public
      Gen3 policy engine
      Go
      •
      Apache License 2.0
      •16•15•6•9•Updated Jan 27, 2025Jan 27, 2025