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    229 repositories

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •3•2•0•10•Updated Apr 21, 2025Apr 21, 2025

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •11•2•1•1•Updated Apr 21, 2025Apr 21, 2025

    • gitops-qa

      Public
      gen3-gitops
      HTML
      •
      Apache License 2.0
      •7•2•0•35•Updated Apr 21, 2025Apr 21, 2025

    • gen3sdk-python

      Public
      Gen3 SDK for Python
      gen3-lib
      Python
      •
      Apache License 2.0
      •26•16•3•20•Updated Apr 21, 2025Apr 21, 2025

    • guppy

      Public
      Server that supports GraphQL queries on data from Elasticsearch
      gen3
      JavaScript
      •
      Apache License 2.0
      •13•7•0•13•Updated Apr 21, 2025Apr 21, 2025

    • commons-frontend-app

      Public template
      Gen3 Data Commons template repository for gen3 frontend framework
      TypeScript
      •
      Apache License 2.0
      •20•5•1•6•Updated Apr 21, 2025Apr 21, 2025

    • fence

      Public
      AuthN/AuthZ OIDC Service
      gen3
      Python
      •
      Apache License 2.0
      •47•38•0•34•Updated Apr 21, 2025Apr 21, 2025

    • mmrf-data-commons

      Public
      Gen3.2 data commons nextjs app for MMRF
      TypeScript
      •
      Apache License 2.0
      •0•1•0•2•Updated Apr 21, 2025Apr 21, 2025

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      gen3
      JavaScript
      •
      Apache License 2.0
      •51•29•43•15•Updated Apr 21, 2025Apr 21, 2025

    • audit-service

      Public
      Python
      •
      Apache License 2.0
      •0•5•0•4•Updated Apr 21, 2025Apr 21, 2025

    • gen3-terraform

      Public
      HCL
      •
      Apache License 2.0
      •0•1•0•8•Updated Apr 21, 2025Apr 21, 2025

    • bih-data-commons

      Public
      BIH Data Commons using Gen3.2
      TypeScript
      •
      Apache License 2.0
      •20•2•0•7•Updated Apr 21, 2025Apr 21, 2025

    • dcf-dataservice

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•6•Updated Apr 21, 2025Apr 21, 2025

    • metadata-service

      Public
      The Metadata Service provides API for retrieving JSON metadata of GUIDs.
      gen3
      Python
      •
      Apache License 2.0
      •10•16•2•1•Updated Apr 21, 2025Apr 21, 2025

    • cdis-manifest

      Public
      Manifests tracking service versions to release to each environment
      HTML
      •
      Apache License 2.0
      •10•8•0•75•Updated Apr 21, 2025Apr 21, 2025

    • genomel_pipelines

      Public
      GenoMEL pipelines in Bionimbus
      Python
      •
      Apache License 2.0
      •1•1•0•1•Updated Apr 20, 2025Apr 20, 2025

    • containers

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •7•1•0•2•Updated Apr 19, 2025Apr 19, 2025

    • sheepdog

      Public
      API for herding data submissions
      gen3
      Python
      •
      Apache License 2.0
      •19•11•0•3•Updated Apr 18, 2025Apr 18, 2025

    • label-boosted-RAG-for-RRG

      Public
      LaB-RAG (Label Boosted Retrieval Augmented Generation): a generalizable framework for captioning using categorical labels as image descriptors.
      Python
      •
      Apache License 2.0
      •0•4•0•6•Updated Apr 18, 2025Apr 18, 2025

    • staging-HEAL-platform-documentation

      Public
      staging and dev area for public documentation for the HEAL platform
      HTML
      •7•0•0•0•Updated Apr 18, 2025Apr 18, 2025

    • .github

      Public template
      For default health files
      Apache License 2.0
      •1•1•0•9•Updated Apr 18, 2025Apr 18, 2025

    • cloud-automation

      Public
      Automation for standing up Gen3 commons
      gen3
      Shell
      •
      Apache License 2.0
      •69•44•99•61•Updated Apr 17, 2025Apr 17, 2025

    • vpodc-data-commons

      Public template
      VPODC Data Commons using Gen3.2
      TypeScript
      •
      Apache License 2.0
      •20•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • vadc-data-commons

      Public template
      VADC Gen3 Data Commons repository for gen3 frontend framework
      JavaScript
      •
      Apache License 2.0
      •20•0•0•1•Updated Apr 17, 2025Apr 17, 2025

    • arborist

      Public
      Gen3 policy engine
      Go
      •
      Apache License 2.0
      •16•16•0•4•Updated Apr 17, 2025Apr 17, 2025

    • indexd

      Public
      Index service server
      gen3
      Python
      •
      Apache License 2.0
      •20•23•24•4•Updated Apr 17, 2025Apr 17, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •171•0•0•13•Updated Apr 17, 2025Apr 17, 2025

    • funnel-example-plugin

      Public
      Golang Plugin development + testing using Hashicorp go-plugin package
      Go
      •
      Apache License 2.0
      •1•0•0•2•Updated Apr 17, 2025Apr 17, 2025

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      •
      Apache License 2.0
      •26•11•2•14•Updated Apr 17, 2025Apr 17, 2025

    • gen3datamodel

      Public
      Translation layer between the GDC Data Dictionary and psqlgraph
      Python
      •
      Apache License 2.0
      •3•1•0•3•Updated Apr 17, 2025Apr 17, 2025