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@vdblab Marcel van den Brink Lab

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    15 repositories

    • dockerfiles

      Public
      Various dockerfiles for our bioinformatics pipelines
      Dockerfile
      •0•3•1•0•Updated Nov 1, 2024Nov 1, 2024

    • FLORAL

      Public
      Fit LOg-RAtio Lasso regression for compositional covariates
      R
      •
      GNU General Public License v3.0
      •0•12•9•1•Updated Oct 28, 2024Oct 28, 2024

    • InflaMix

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • resources

      Public
      Infrastructure for static resources used by vdblab-pipelines
      Python
      •0•0•2•0•Updated Oct 14, 2024Oct 14, 2024

    • vdblab-shotgun

      Public
      Shotgun metagenomic sequencing processing pipeline
      Python
      •
      MIT License
      •1•1•29•0•Updated Sep 3, 2024Sep 3, 2024

    • FLORAL-analysis

      Public
      R code associated with the analysis results reported in FLORAL's manuscript
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 1, 2024Sep 1, 2024

    • legacy-amplicon-pipeline

      Public
      R
      •0•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • vdblab-amplicon

      Public
      Snakemake DADA2-based 16S amplicon sequenicng workflow
      Python
      •
      MIT License
      •0•1•2•0•Updated Jun 27, 2024Jun 27, 2024

    • MURINE

      Public
      Multifunction User Rodent Interface for iN-vivo Experiments
      R
      •
      Other
      •0•0•0•0•Updated Sep 26, 2023Sep 26, 2023

    • Elkrief-Colitis-FMT-2023

      Public
      R
      •0•0•0•0•Updated Sep 8, 2023Sep 8, 2023

    • Dewolf-TCR-landscape-2022

      Public template
      Supplementary data for "Tissue-specific landscape of the human T cell repertoire in graft-versus-host-disease"
      Jupyter Notebook
      •0•2•0•0•Updated Aug 9, 2023Aug 9, 2023

    • vdblab.github.io

      Public
      Creating a new repository for the vdblab GitHub Pages site
      0•0•0•0•Updated May 4, 2023May 4, 2023

    • PARADIGM

      Public
      PARADIGM - PARameters Associated with Dynamics of Gut Microbiome
      R
      •0•2•0•0•Updated Apr 11, 2023Apr 11, 2023

    • Blautia_and_GVHD

      Public
      Amplicon sequencing data accession numbers of paper: "Intestinal Blautia Is Associated with Reduced Death from Graft-versus-Host Disease" (https://pubmed.ncbi.nlm.nih.gov/25977230/)
      0•0•0•0•Updated Mar 7, 2022Mar 7, 2022

    • CART_and_microbiome

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 15, 2021Nov 15, 2021