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  1. FLORAL FLORAL Public

    Fit LOg-RAtio Lasso regression for compositional covariates

    R 12

  2. dockerfiles dockerfiles Public

    Various dockerfiles for our bioinformatics pipelines

    Dockerfile 3

  3. Dewolf-TCR-landscape-2022 Dewolf-TCR-landscape-2022 Public template

    Supplementary data for "Tissue-specific landscape of the human T cell repertoire in graft-versus-host-disease"

    Jupyter Notebook 2

  4. PARADIGM PARADIGM Public

    PARADIGM - PARameters Associated with Dynamics of Gut Microbiome

    R 2

  5. vdblab-shotgun vdblab-shotgun Public

    Shotgun metagenomic sequencing processing pipeline

    Python 1 1

  6. vdblab-amplicon vdblab-amplicon Public

    Snakemake DADA2-based 16S amplicon sequenicng workflow

    Python 1

Repositories

Showing 10 of 15 repositories
  • dockerfiles Public

    Various dockerfiles for our bioinformatics pipelines

    vdblab/dockerfiles’s past year of commit activity
    Dockerfile 3 0 1 0 Updated Nov 1, 2024
  • FLORAL Public

    Fit LOg-RAtio Lasso regression for compositional covariates

    vdblab/FLORAL’s past year of commit activity
    R 12 GPL-3.0 0 9 1 Updated Oct 28, 2024
  • InflaMix Public
    vdblab/InflaMix’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Oct 24, 2024
  • resources Public

    Infrastructure for static resources used by vdblab-pipelines

    vdblab/resources’s past year of commit activity
    Python 0 0 2 0 Updated Oct 14, 2024
  • vdblab-shotgun Public

    Shotgun metagenomic sequencing processing pipeline

    vdblab/vdblab-shotgun’s past year of commit activity
    Python 1 MIT 1 29 (2 issues need help) 0 Updated Sep 3, 2024
  • FLORAL-analysis Public

    R code associated with the analysis results reported in FLORAL's manuscript

    vdblab/FLORAL-analysis’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 1, 2024
  • vdblab/legacy-amplicon-pipeline’s past year of commit activity
    R 0 0 0 0 Updated Jul 11, 2024
  • vdblab-amplicon Public

    Snakemake DADA2-based 16S amplicon sequenicng workflow

    vdblab/vdblab-amplicon’s past year of commit activity
    Python 1 MIT 0 2 0 Updated Jun 27, 2024
  • MURINE Public

    Multifunction User Rodent Interface for iN-vivo Experiments

    vdblab/MURINE’s past year of commit activity
    R 0 0 0 0 Updated Sep 26, 2023
  • vdblab/Elkrief-Colitis-FMT-2023’s past year of commit activity
    R 0 0 0 0 Updated Sep 8, 2023

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