small upds, allow spaces in path

.github/workflows/run_tests.yml

@@ -1,5 +1,5 @@
 # action.yml
-name: 'Run tests'
+name: 'Tests'
 
 on:
   # Triggers the workflow on push or pull request events but only for the "main" branch
@@ -25,8 +25,8 @@ jobs:
           entrypoint: bash
           args: >
             -c "
-            cd /github/workspace &&
-            pip install pytest --target /tmp &&
-            PYTHONPATH=/tmp python -m pytest test -m "not slow"
-            PYTHONPATH=/tmp python -m pytest test --durations=0
+            cd /github/workspace
+            && pip install pytest --target /tmp
+            && PYTHONPATH=/tmp python -m pytest test -m "not slow"
+            && PYTHONPATH=/tmp python -m pytest test --durations=0
             "

README.md

@@ -19,7 +19,7 @@ mkdir -p results
 
 # running UnPaSt with default parameters and example data
 command="python run_unpast.py --exprs test/scenario_B500.exprs.tsv.gz --basename results/scenario_B500"
-docker run -u $(id -u):$(id -g) -v $(pwd):/data --entrypoint bash freddsle/unpast -c "cd /data && $command"
+docker run -u $(id -u):$(id -g) -v "$(pwd)":/data --entrypoint bash freddsle/unpast -c "cd /data && $command"
 ```
 
 

test/test_run_unpast.py

@@ -7,7 +7,7 @@
 TEST_DIR = os.path.dirname(__file__)
 RESULTS_DIR = os.path.join(TEST_DIR, "results")
 if not os.access(RESULTS_DIR, os.W_OK):
-    # repo dir is currently read-only during github-actions testing
+    # repo dir is currently read-only during the tesging stage in github-action
     RESULTS_DIR = "/tmp/unpast/results"
 REFERENCE_OUTPUT_DIR = os.path.join(TEST_DIR, "test_reference_output")