T.A.R.D.I.S.

R package for TArgeted Raw Data Integration In Spectrometry

Installation

Make sure R (version >= 4.4.0) is installed on your computer:

https://cloud.r-project.org/index.html

For Windows users, Rtools should be installed as well:

https://cran.r-project.org/bin/windows/Rtools/rtools44/rtools.html

For Mac users, please install Xcode and a GNU Fortran compiler, see: https://mac.r-project.org/tools/index.html For Xcode, you can run this line in your Mac OS terminal:

sudo xcode-select --install

In R, run:

if (!require("devtools", quietly = TRUE))
    install.packages("devtools")

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

devtools::install_github("pablovgd/T.A.R.D.I.S.",build_vignettes = TRUE,
  repos=c('http://cran.us.r-project.org',"http://bioconductor.org/packages/3.19/bioc"),
  dependencies=TRUE, type="source")

Usage

Load the package:

library(TARDIS)

Read the vignette for a tutorial on how to use T.A.R.D.I.S.

RShowDoc("gui_tutorial",package = "TARDIS")

To launch the GUI in R:

runTardis()

Copyright

T.A.R.D.I.S. is licensed under the GPLv3

As a summary, the GPLv3 license requires attribution, inclusion of copyright and license information, disclosure of source code and changes. Derivative work must be available under the same terms.

© Pablo Vangeenderhuysen (2024)