Skip to content

fix build errors with sz_link and missing hdf5#506

Open
daeho-ro wants to merge 2 commits intopachterlab:masterfrom
daeho-ro:master
Open

fix build errors with sz_link and missing hdf5#506
daeho-ro wants to merge 2 commits intopachterlab:masterfrom
daeho-ro:master

Conversation

@daeho-ro
Copy link
Copy Markdown

cd /private/tmp/kallisto-20260228-18650-dy0tkb/kallisto-0.52.0/ext/bifrost/build/src && /opt/homebrew/Library/Homebrew/shims/mac/super/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/private/tmp/kallisto-20260228-18650-dy0tkb/kallisto-0.52.0/ext/bifrost/src -Wno-subobject-linkage -Wno-return-type -std=c++11  -O3 -DNDEBUG -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_static.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -c /private/tmp/kallisto-20260228-18650-dy0tkb/kallisto-0.52.0/ext/bifrost/src/Bifrost.cpp
In file included from /private/tmp/kallisto-20260228-18650-dy0tkb/kallisto-0.52.0/ext/bifrost/src/Bifrost.cpp:2:
In file included from /private/tmp/kallisto-20260228-18650-dy0tkb/kallisto-0.52.0/ext/bifrost/src/ColoredCDBG.hpp:10:
In file included from /private/tmp/kallisto-20260228-18650-dy0tkb/kallisto-0.52.0/ext/bifrost/src/DataManager.hpp:10:
/private/tmp/kallisto-20260228-18650-dy0tkb/kallisto-0.52.0/ext/bifrost/src/DataStorage.tcc:81:69: error: no member named 'sz_link' in 'DataStorage<Unitig_data_t>'
   81 |         for (size_t i = 0; i != sz_link; ++i) unitig_cs_link[i] = o.sz_link[i].load();
      |                                                                   ~ ^
1 error generated.
make[5]: *** [src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o] Error 1

@daeho-ro daeho-ro changed the title fix build errors fix build errors with sz_link and missing hdf5 Feb 28, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant