Updates since version 0.28.2:
Major:
- Upgraded kallisto to 0.51.1 and bustools to 0.44.1
- Added lr-kallisto (--long) option, and enabling k>31
- Added kb extract
- Added various kallisto binaries (w/ and w/o optimizations; w/ and w/o long k-mer sizes)
Other:
- Allow -i NONE in kb ref to create t2g+fasta but no index
- Various bug fixes (pandas version dependency, adata.X in nac containing total matrix, summing matrices not mishandling scientific notation, etc.)
- Ended support for python 3.7