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Address JOSS reviewers comments #58

Merged
merged 136 commits into from
May 15, 2023
Merged

Address JOSS reviewers comments #58

merged 136 commits into from
May 15, 2023

Commits on Nov 20, 2022

  1. add commented structure to get started

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  2. add reference structure

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  3. update roxygen

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  4. add internal keywords to some methods

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  5. add alias for extract

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  6. organize reference for website, closes #56

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  7. update old readme figures

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  8. improves readme, closes #55

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  9. re issue #55

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  10. closes #53

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Commits on Nov 26, 2022

  1. closes #18

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  2. closes #63

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  3. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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  4. [Bot] build pdf

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  5. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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  6. closes #64

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  7. [Bot] build pdf

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  8. closes #65

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  9. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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  10. [Bot] build pdf

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  11. closes #67

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  12. closes #68

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  13. closes #69

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  14. closes #70

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  15. closes #71 closes #72

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  16. closes #73

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  17. closes #74

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  18. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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  19. [Bot] build pdf

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  20. closes #75 closes #76

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  21. closes #77 closes #78

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  22. [Bot] build pdf

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  23. closes #79 closes #80

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  24. closes #81

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  25. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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  26. [Bot] build pdf

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  27. closes #82

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  28. closes #83

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  29. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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  30. [Bot] build pdf

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  31. closes #84

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  32. closes #86

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  33. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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  34. closes #87

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  35. [Bot] build pdf

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  36. closes #88

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  37. closes #89

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  38. closes #90

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  39. closes #91

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  40. closes #92 + addresses a point brought up in the issue above

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  41. closes #93

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  42. closes #94

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  43. closes #95

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  44. closes #96

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  45. closes #97 closes #100

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  46. closes #98

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  47. closes #101

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  48. closes #99

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  49. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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  50. [Bot] build pdf

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Commits on Nov 29, 2022

  1. closes #104 closes #105

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  2. [Bot] build pdf

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  3. closes #106

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  4. [Bot] build pdf

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  5. closes #107

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  6. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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  7. [Bot] build pdf

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  8. closes #108

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  9. closes #109 closes #110

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  10. closes #111

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  11. closes #112

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  12. closes #114

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  13. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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  14. add log and tex to gitignore

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  15. closes #116

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  16. [Bot] build pdf

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  17. closes #117

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  18. [Bot] build pdf

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  19. closes #117 closes #60

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  20. fix conflict 

    Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisheries-lab/sspm into val-address-joss-reviews

# Conflicts:
#	paper/paper.md
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  21. [Bot] build pdf

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  22. closes #62

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  23. closes #61

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Commits on Dec 7, 2022

  1. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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  2. closes #113

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  3. closes #115

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  4. [Bot] build pdf

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  5. fix plot sizes, closes #118

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  6. closes #119

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  7. closes #121

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  8. closes #124

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  9. closes #123

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  10. closes #123

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  11. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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Commits on Dec 8, 2022

  1. add RTriangle for cran

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Commits on Jan 29, 2023

  1. update renv

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  2. remove useless code

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  3. update as dataset to work best with polygons

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  4. move code for checking if already discretized

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  5. re document

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  6. move test cov to 80%

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  7. delete trajectory

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  8. remove old deprecated tests

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  9. update tests and clean

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  10. add tests

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  11. rename file

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  12. export changes

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  13. imorive tests

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  14. remove topic

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  15. clean up tests

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  16. upgrade tests

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  17. fix aggregate

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  18. add tests for units

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  19. add tests for units closes #57 and closes #30

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  20. Merge branch 'val-address-joss-reviews' of github.com:pedersen-fisher… 

    …ies-lab/sspm into val-address-joss-reviews
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Commits on Jan 30, 2023

  1. remove line

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  2. update to tidyselect 1.2

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  3. skip those on mac

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  4. skip integration on mac

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  5. add summary

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  6. closse #122

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  7. closes #122

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Commits on May 1, 2023

  1. added a section discussing connections with other spatiotemporal mode… 

    …lling appoaches
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  2. [Bot] build pdf

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Commits on May 2, 2023

  1. addressing issue #125

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  2. [Bot] build pdf

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  3. adding the actual references we need

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  4. Merge branch 'eric-address-joss' of https://github.com/pedersen-fishe… 

    …ries-lab/sspm into eric-address-joss
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  5. [Bot] build pdf

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Commits on May 15, 2023

  1. fix merge conflicts

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  2. [Bot] build pdf

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    VLucet authored and github-actions[bot] committed May 15, 2023
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  3. fix bib

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  4. Merge branch 'eric-address-joss' of github.com:pedersen-fisheries-lab… 

    …/sspm into eric-address-joss
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  5. [Bot] build pdf

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  6. Merge pull request #129 from pedersen-fisheries-lab/eric-address-joss 

    Eric address joss / merge into addressing branch
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  7. [Bot] build pdf

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