Merge pull request #57 from phac-nml/allele

Allele

.travis.yml

@@ -1,6 +1,6 @@
 language: python
 python:
-  - "3.6"
+  - "3.5"
 before_install:
   - sudo apt-get update
 install:
@@ -14,7 +14,7 @@ install:
   - conda info -a
   - conda config --add channels bioconda
   - conda config --add channels conda-forge
-  - conda create -q -n test-environment python=3.6 samtools>=1.7 pandas>=0.23 bowtie2>=2.3 mash>=2 bcftools>=1.7 biopython>=1.69 blast>=2.2.31 seqtk>=1.2 pytest>=3.6
+  - conda create -q -n test-environment python=3.5 samtools>=1.7 pandas>=0.23 bowtie2>=2.3 mash>=2 bcftools>=1.7 biopython>=1.69 blast>=2.2.31 seqtk>=1.2 pytest>=3.5
   - conda activate test-environment
   - python setup.py install
 

ectyper/__init__.py

@@ -1 +1 @@
-__version__ = "0.5.1"
+__version__ = "0.5.3"

ectyper/ectyper.py

@@ -74,7 +74,7 @@ def run_program():
         LOG.info("Reporting results:\n")
 
         predictionFunctions.report_result(final_predictions, os.path.join(output_directory, 'output.csv'))
-        LOG.info("\nECTYper has finished successfully.")
+        LOG.info("\nECTyper has finished successfully.")
 
 
 def create_output_directory(output_dir):

recipe/meta.yaml

@@ -20,11 +20,12 @@ build:
 
 requirements:
     build:
-        - python >=3.6
+        - python >=3.5
+        - skip: True # [not py35]
 
     run:
-        - python >=3.6
-        - pytest >=3.6
+        - python >=3.5
+        - pytest >=3.5
         - pandas >=0.23
         - samtools >=1.7
         - bowtie2 >=2.3