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isaExplorer

Build Status codecov Python36 PyPI

Tools for exploring ISA-format study descriptions

To Install isaExplorer from github, you can do:

pip install isaExplorer

And then you can import it in your Python code as follows:

import isaExplorer as ie

and then use the available functions such as this function which lists the Studies and Assays in an ISA archive:

ie.exploreISA('/path/to/ISATAB/')

or this function which returns a specific Assay from a specific Study:

first_assay = ie.getISAAssay(1, 1, '/path/to/ISATAB/')

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Tools for exploring ISA-format (http://www.isacommons.org) study descriptions

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