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A.3] Nextflow AWS Pipeline Frontend Management

Past due by about 3 years 0% complete

Duration: 4 sprints (2 months)
Start: 2021-11-15
End: 2022-01-15

Users will have the ability to run our genomics pipeline from the frontend.
We have ported our exome processing pipeline to AWS batch.
Our pipeline processes on AWS batch and from a fastq file repository on S3-compatible storage produces CSV files in the patient folder.
Pipeline will be conn…

Duration: 4 sprints (2 months)
Start: 2021-11-15
End: 2022-01-15

Users will have the ability to run our genomics pipeline from the frontend.
We have ported our exome processing pipeline to AWS batch.
Our pipeline processes on AWS batch and from a fastq file repository on S3-compatible storage produces CSV files in the patient folder.
Pipeline will be connected to the web interface so it can be launched and stopped.
Frontend dashboard will be implemented to track pipeline progress.
Email system to notify users that their data is ready to be viewed.

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