Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
blinard-BIOINFO committed Nov 20, 2021
1 parent 2d9bb6f commit 18fda8a
Showing 1 changed file with 22 additions and 0 deletions.
22 changes: 22 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,28 @@
*Bioinformatics, btaa657, 22 July 2020*<br />
<br />

## Important notices


```diff

11/2021

Following a wrong refactoring, bug in the ND computation was introduced and is now fixed.
It was located in the java code of the PEWO_java subrepository (which is in charge of computaing node distances).
Every node distance (ND) reported by PEWO was consistenlty shifted by +1, making every reported value ND+1.
This +1 shift occured consistently for any query sequence, whatever the selected inputs, software or software parameters.

CONSEQUENTLY, EXPERIMENTS AND SOFTWARE COMPARISONS PRIOR TO THE BUGFIX ARE STILL VALID.

Values reported by PEWO in final tables and plots were just shifted by +1.
Following the bugfix there is no shift anymore.
The error was hard to spot as in most experimental setups average NDs are higher than 0 or 1.

Following this bugfix. PEWO has been attributed a 1.0.0 version tag.
```


## Overview

PEWO compiles a set of workflows dedicated to the evaluation of phylogenetic placement algorithms and their software implementation. It focuses on reporting placement accuracy under different conditions and associated computational costs.
Expand Down

0 comments on commit 18fda8a

Please sign in to comment.