fix testRlease, ref name changes, adjust paths relative to tests dire…

…ctory
pinellolab · Jun 15, 2024 · 357daf4 · 357daf4
1 parent 80dc1bd
commit 357daf4
Showing 1 changed file with 7 additions and 7 deletions.
diff --git a/tests/testRelease.sh b/tests/testRelease.sh
@@ -15,20 +15,20 @@ echo Running CRISPRessoWGS
 CRISPRessoWGS -b Both.Cas9.fastq.smallGenome.bam -r smallGenome/smallGenome.fa -f Cas9.regions.txt --debug &> CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome.log
 
 echo TESTING CRISPRESSO2
-diff CRISPResso_on_FANC.Cas9/Reference.nucleotide_frequency_table.txt expectedResults/CRISPResso_on_FANC.Cas9/Reference.nucleotide_frequency_table.txt
-diff CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt tests/expectedResults/CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt
+diff CRISPResso_on_FANC.Cas9/Nucleotide_frequency_table.txt expectedResults/CRISPResso_on_FANC.Cas9/Nucleotide_frequency_table.txt
+diff CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt expectedResults/CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt
 
 echo TESTING CRISPRESSO2 PARAMS
-diff CRISPResso_on_params/FANC.nucleotide_frequency_table.txt expectedResults/CRISPResso_on_params/FANC.nucleotide_frequency_table.txt
-diff CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt tests/expectedResults/CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt
+diff CRISPResso_on_params/FANC.Nucleotide_frequency_table.txt expectedResults/CRISPResso_on_params/FANC.Nucleotide_frequency_table.txt
+diff CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt expectedResults/CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt
 
 echo TESTING BATCH
-diff CRISPRessoBatch_on_FANC/Reference.MODIFICATION_FREQUENCY_SUMMARY.txt tests/expectedResults/CRISPRessoBatch_on_FANC/Reference.MODIFICATION_FREQUENCY_SUMMARY.txt
+diff CRISPRessoBatch_on_FANC/MODIFICATION_FREQUENCY_SUMMARY.txt expectedResults/CRISPRessoBatch_on_FANC/MODIFICATION_FREQUENCY_SUMMARY.txt
 
 echo TESTING POOLED
-diff CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt tests/expectedResults/CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt
+diff CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt expectedResults/CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt
 
 echo TESTING WGS
-diff CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt tests/expectedResults/CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt
+diff CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt expectedResults/CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt
 
 echo Finished