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fix testRlease, ref name changes, adjust paths relative to tests dire… #443

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fix testRlease, ref name changes, adjust paths relative to tests dire… #443

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14 changes: 7 additions & 7 deletions tests/testRelease.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -15,20 +15,20 @@ echo Running CRISPRessoWGS
CRISPRessoWGS -b Both.Cas9.fastq.smallGenome.bam -r smallGenome/smallGenome.fa -f Cas9.regions.txt --debug &> CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome.log

echo TESTING CRISPRESSO2
diff CRISPResso_on_FANC.Cas9/Reference.nucleotide_frequency_table.txt expectedResults/CRISPResso_on_FANC.Cas9/Reference.nucleotide_frequency_table.txt
diff CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt tests/expectedResults/CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt
diff CRISPResso_on_FANC.Cas9/Nucleotide_frequency_table.txt expectedResults/CRISPResso_on_FANC.Cas9/Nucleotide_frequency_table.txt
diff CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt expectedResults/CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt

echo TESTING CRISPRESSO2 PARAMS
diff CRISPResso_on_params/FANC.nucleotide_frequency_table.txt expectedResults/CRISPResso_on_params/FANC.nucleotide_frequency_table.txt
diff CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt tests/expectedResults/CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt
diff CRISPResso_on_params/FANC.Nucleotide_frequency_table.txt expectedResults/CRISPResso_on_params/FANC.Nucleotide_frequency_table.txt
diff CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt expectedResults/CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt

echo TESTING BATCH
diff CRISPRessoBatch_on_FANC/Reference.MODIFICATION_FREQUENCY_SUMMARY.txt tests/expectedResults/CRISPRessoBatch_on_FANC/Reference.MODIFICATION_FREQUENCY_SUMMARY.txt
diff CRISPRessoBatch_on_FANC/MODIFICATION_FREQUENCY_SUMMARY.txt expectedResults/CRISPRessoBatch_on_FANC/MODIFICATION_FREQUENCY_SUMMARY.txt

echo TESTING POOLED
diff CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt tests/expectedResults/CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt
diff CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt expectedResults/CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt

echo TESTING WGS
diff CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt tests/expectedResults/CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt
diff CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt expectedResults/CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt

echo Finished
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