Bump actions/checkout from 3 to 4 (#414)

Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

.github/workflows/cml.yml

@@ -70,7 +70,7 @@ jobs:
   deploy:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - uses: iterative/setup-cml@v1
       - name: Setup tmate debug session
         uses: mxschmitt/action-tmate@v3
@@ -104,7 +104,7 @@ jobs:
       image: ghcr.io/pinellolab/pyrovelocity:master
       options: --gpus all
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
       - name: Set up python

.github/workflows/colab.yml

@@ -38,7 +38,7 @@ jobs:
           echo "  BASE_REF:" "$GITHUB_BASE_REF"
           echo "       SHA:" "$GITHUB_SHA"
       - name: Retrieve the source code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
           fetch-depth: 0
           ref: ${{ github.sha }}

.github/workflows/deploy.yml

@@ -61,7 +61,7 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
       - name: Set up QEMU
         uses: docker/setup-qemu-action@v2
       - name: Set up Docker Buildx
@@ -112,7 +112,7 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
       - name: "Authenticate to Google Cloud"
         uses: "google-github-actions/auth@v1"
         with:

.github/workflows/docker.yml

@@ -40,7 +40,7 @@ jobs:
           echo "        BASE_REF:" "$GITHUB_BASE_REF"
           echo "             SHA:" "$GITHUB_SHA"
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
       - name: Set up QEMU
         uses: docker/setup-qemu-action@v2
       - name: Set up Docker Buildx
@@ -91,7 +91,7 @@ jobs:
           echo "        BASE_REF:" "$GITHUB_BASE_REF"
           echo "             SHA:" "$GITHUB_SHA"
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
       - name: Set up QEMU
         uses: docker/setup-qemu-action@v2
       - name: Set up Docker Buildx

.github/workflows/labeler.yml

@@ -14,7 +14,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out the repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Run Labeler
         uses: crazy-max/[email protected]

.github/workflows/release.yml

@@ -14,7 +14,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out the repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
           fetch-depth: 2
 

.github/workflows/tests.yml

@@ -25,7 +25,7 @@ jobs:
 
     steps:
       - name: Check out the repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Set up Python ${{ matrix.python }}
         uses: actions/setup-python@v4
@@ -110,7 +110,7 @@ jobs:
     needs: tests
     steps:
       - name: Check out the repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Set up Python
         uses: actions/setup-python@v4