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feat(workflows): create model training tasks #513

Merged
merged 117 commits into from
Feb 3, 2024
Merged

feat(workflows): create model training tasks #513

merged 117 commits into from
Feb 3, 2024

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cameronraysmith
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@cameronraysmith cameronraysmith commented Jan 27, 2024 •
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@cameronraysmith cameronraysmith added the enhancement New feature or request label Jan 27, 2024
@cameronraysmith cameronraysmith self-assigned this Jan 27, 2024
@cameronraysmith cameronraysmith added this to the 0.2.x milestone Jan 27, 2024
@cameronraysmith cameronraysmith linked an issue Jan 27, 2024 that may be closed by this pull request
prototype workflow task for distributed model training #497
Closed
@cameronraysmith cameronraysmith added the build-images Control image build on PRs label Jan 27, 2024
@cameronraysmith
fix(execution_utils): construct dataclasses given defaults
fa95db3 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(velocity_model): set u0/s0 types to RNAInputType
d12e0dd 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(data): add load_anndata_from_path
7d43e29 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
refactor(api): use load_anndata_from_path
c04db41 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(data): support subsetting during data download
fa066cd 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(utils): update AnnData type import
42d21d9 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
refactor(train): move interface type to dedicated module
db99efa 
remove model save which is done in postprocessing
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(preprocess): refactor for compatibility with dataclass interface
19c7b68 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(interfaces): collect dataclass interfaces
f2c6ea9 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(main_workflow): use dataclass interfaces
2324654 
Signed-off-by: Cameron Smith <[email protected]>
cameronraysmith added a commit that referenced this pull request Feb 3, 2024
@cameronraysmith
chore(version): 0.2.0b9 (#513)
4af0495 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith cameronraysmith removed build-images Control image build on PRs execute-workflow Control workflow execution on PRs labels Feb 3, 2024
@cameronraysmith cameronraysmith marked this pull request as ready for review February 3, 2024 19:29
@cameronraysmith cameronraysmith merged commit eefde27 into beta Feb 3, 2024
34 checks passed
@cameronraysmith cameronraysmith deleted the 497-train branch February 3, 2024 19:43
@cameronraysmith cameronraysmith requested a deployment to release February 3, 2024 21:42 — with GitHub Actions Abandoned
@cameronraysmith cameronraysmith added the python Pull requests that update Python code label Mar 16, 2024
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enhancement New feature or request python Pull requests that update Python code testing Testing
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0.2.x
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@cameronraysmith @pyrovelocity-bot