update to 1.4.2

piplus2 · Mar 17, 2024 · a647086 · a647086
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: SPUTNIK
 Type: Package
-Title: SPatially aUTomatic deNoising for Ims toolKit
-Version: 1.4.1
+Title: Spatially automatic denoising for Ims toolkit
+Version: 1.4.2
 Author: Paolo Inglese [aut, cre], Goncalo Correia [aut, ctb]
 Maintainer: Paolo Inglese <[email protected]>
 Authors@R: c(person("Paolo", "Inglese", email = "[email protected]", role = c("aut", "cre")),
@@ -36,6 +36,6 @@ Imports:
     doSNOW,
     foreach
 Suggests: testthat
-RoxygenNote: 7.2.2
+RoxygenNote: 7.3.1
 URL: https://github.com/paoloinglese/SPUTNIK
 BugReports: https://github.com/paoloinglese/SPUTNIK/issues
diff --git a/NEWS b/NEWS
@@ -5,6 +5,11 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [1.4.2] - 2024-03-17
+### Update (CRAN compatibility)
+- Removed test for CRS scripts
+- Updated the Description file
+
 ## [1.4.1] - 2022-11-15
 ### Update
 - Changed to support the new version of spatstat

diff --git a/inst/CITATION b/inst/CITATION
@@ -1,16 +1,11 @@
-citHeader("To cite SPUTNIK in publications use:")
-
-citEntry(
-  entry    = "Article",
+bibentry(
+  bibtype  = "Article",
   title    = "SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data",
   author   = "Inglese Paolo, Correia Gonçalo, Takats Zoltan, Nicholson Jeremy K and Glen Robert C",
   journal  = "Bioinformatics",
   year     = "2018",
   volume   = "36",
   number   = "1",
   pages    = "178-180",
-  url      = "https://doi.org/10.1093/bioinformatics/bty622",
-  textVersion = paste(
-  "Inglese, P., Correia, G., Takats, Z., Nicholson, J. K., & Glen, R. C. (2019). SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data. Bioinformatics, 35(1), 178-180."
-  )
+  doi      = "https://doi.org/10.1093/bioinformatics/bty622"
 )
diff --git a/test_all.R b/test_all.R
@@ -9,7 +9,5 @@ source('tests/test_global_ref_filter.R')
 
 source('tests/test_pixel_count_filter.R')
 
-source('tests/test_csr_filter.R')
-
 test_results <- test_dir('tests/', reporter = 'summary')
 print(test_results)
diff --git a/tests/test_csr_filter.R b/tests/test_csr_filter.R