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Releases: pjedge/longshot

v1.0.0

15 Mar 20:23
d256e5b

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Merge pull request #97 from kpalin/dev

Move AC INFO as AD FORMAT

v.0.4.5

02 May 22:45

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  • functionality to call tri-allelic SNVs (added by @ftostevin-ont)
  • fix problem with outputting haplotagged bam file (also output index)

Version 0.4.4

12 Jan 14:15

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v0.4.4

Version 0.4.4

Version 0.4.3

24 Feb 19:06

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Minor fixes.

v0.4.2

12 Oct 23:55

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  • several bug fixes related to VCF specification
  • minor changes to output files

v0.4.1

14 Mar 20:18

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  • Output single BAM. Add tags HP (haplotype) and PS (phase sets) to output reads.
  • Work with CRAM files

v0.4.0

04 Jan 00:23
28d054e

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  • added VCF input option for variants to genotype and phase
  • changed default indel priors to enable indel calling with VCF

v0.3.5

16 Sep 23:19

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fixed bug causing crash when chromosome has no variants

v0.3.4

02 May 18:09
dc0619e

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Added filter flags to VCF output to avoid errors with BCFtools/other tools.

v0.3.3

26 Mar 23:59
e4fc936

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  • Fixed a bug causing values at the far left end of the alignment band not to be properly cleared out and then get re-used in subsequent dynamic programming iterations.