openapi spec and client gen

README.md

@@ -129,6 +129,26 @@ a file (say) called `test_models.py` use
 `python manage.py test pkpdapp.tests.test_models`
 - code coverage tests: can't be done locally
 
+## Generating OpenAPI spec
+
+The front-end communicates with the back-end using a REST API. The API can be
+described using the OpenAPI specification. To generate the OpenAPI
+specification, run the following command:
+
+```bash
+python manage.py generateschema --file schema.yml
+```
+
+## Generating RTX Query API class
+
+The front-end uses the Redux Toolkit RTX Query tool to automatically generate a
+client for the api based on the OpenAPI spec described above. To generate the
+client, run the following command in the frontend directory:
+
+```bash
+npx @rtk-query/codegen-openapi openapi-config.json
+```
+
 # Running the cache
 
 Install the cache using

pkpdapp/pkpdapp/models/likelihoods.py

@@ -226,7 +226,6 @@ class LogLikelihood(models.Model):
         related_name='parents',
         symmetrical=False,
         through=LogLikelihoodParameter,
-        blank=True, null=True,
         through_fields=('parent', 'child'),
     )
 

pkpdapp/pkpdapp/settings.py

@@ -24,6 +24,9 @@
 # Set BASE_DIR to two directories up
 BASE_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
 
+# setup automatic pk column for models
+DEFAULT_AUTO_FIELD = 'django.db.models.AutoField'
+
 
 # Quick-start development settings - unsuitable for production
 # See https://docs.djangoproject.com/en/3.0/howto/deployment/checklist/

pkpdapp/pkpdapp/urls.py

@@ -82,7 +82,5 @@
     path('api/logout/', api.logout_view, name='auth-logout'),
     path('api/session/', api.SessionView.as_view(), name='auth-session'),
     path('api/whoami/', api.WhoAmIView.as_view(), name='auth-whoami'),
-    path('auth/', include('djoser.urls')),
-    path('auth/', include('djoser.urls.authtoken')),
     path('api-auth/', include('rest_framework.urls'))
 ]