Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

VCF Download : column changes for standard format #410

Open
Don-Isdale opened this issue Sep 17, 2024 · 0 comments
Open

VCF Download : column changes for standard format #410

Don-Isdale opened this issue Sep 17, 2024 · 0 comments
Assignees

Comments

@Don-Isdale
Copy link
Collaborator

Introduction

The Genotype Table enables the user to download a VCF file containing the last-received VCF genotype lookup result from the server.

Testing the downloaded VCF against the standard

Applying vcf-validator to the downloaded VCF shows some differences from the standard, for example swap the order of the POS and ID columns, add columns QUAL, FILTER, INFO.

@Don-Isdale Don-Isdale self-assigned this Sep 17, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant