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@plantinformatics

Plant Informatics (Agriculture Victoria)

Genomics Data team at Agriculture Victoria

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  1. pretzel pretzel Public

    Javascript full-stack framework for Big Data visualisation and analysis

    JavaScript 44 13

  2. pretzel-data pretzel-data Public

    Data structure for https://github.com/plantinformatics/pretzel

    2

  3. pretzel-application-note pretzel-application-note Public

    A repository for an application note about pretzel

    TeX

  4. pretzel-input-generator pretzel-input-generator Public

    Nextflow

  5. pretzel-user-guide-old pretzel-user-guide-old Public

    Pretzel User Guide

  6. Durum_iSelect_90kSNP_GenotypeCalling Durum_iSelect_90kSNP_GenotypeCalling Public

    Perl script for generating genotype calls for unrelated durum wheat samples assayed using the Illumina iSelect 90K SNP bead chip array

    Perl

Repositories

Showing 10 of 25 repositories
  • pretzel-documentation-website Public
    plantinformatics/pretzel-documentation-website’s past year of commit activity
    Shell 0 1 2 2 Updated Dec 23, 2024
  • lamington Public

    Core Diversity Set Explorer

    plantinformatics/lamington’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Dec 20, 2024
  • pretzel Public

    Javascript full-stack framework for Big Data visualisation and analysis

    plantinformatics/pretzel’s past year of commit activity
    JavaScript 44 GPL-3.0 13 144 8 Updated Dec 19, 2024
  • brioche Public

    Brioche is a bioinformatics pipeline for mapping markers to a given reference genome. brioche uses Nextflow, a domain-specific language (DSL) for defining workflows, as its workflow management tool. Brioche streamlines marker mapping to reference genomes through a Nextflow-powered pipeline.

    plantinformatics/brioche’s past year of commit activity
    R 0 0 0 0 Updated Dec 9, 2024
  • genolink Public

    Genolink is a middleware for integrating genotype databases and Genesys, reducing data redundancy, and enabling real-time data access and filtering across genomic platforms.

    plantinformatics/genolink’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Dec 6, 2024
  • vcf-genotype-brapi Public

    Client and server functions to access genotype data from VCF via a custom web API and BrAPI

    plantinformatics/vcf-genotype-brapi’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 26, 2024
  • pretzel-static-pages Public

    Static HTML Content for the landing page of the Pretzel project instance

    plantinformatics/pretzel-static-pages’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 8, 2024
  • shortbread2 Public

    Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.

    plantinformatics/shortbread2’s past year of commit activity
    Perl 0 0 0 0 Updated Oct 16, 2024
  • pretzel-input-generator Public
    plantinformatics/pretzel-input-generator’s past year of commit activity
    Nextflow 0 GPL-3.0 0 9 0 Updated Oct 4, 2024
  • interval-bins Public

    binEvenLengthRound() : Calculate the bin size for even-sized bins to span the given interval. binBoundaries() : Generate an array of even-sized bins to span the given interval.

    plantinformatics/interval-bins’s past year of commit activity
    JavaScript 0 0 0 0 Updated Aug 16, 2024
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