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Improve performance of VCF Genotype Request processing #461

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Don-Isdale opened this issue Dec 12, 2024 · 0 comments

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Don-Isdale commented Dec 12, 2024

Utilise multi-threading for improved performance in processing VCF Genotype Requests

use bcftools view instead of zcat | cut. DC noted that view is faster than query for this.
use -G, --drop-genotypes to leave out genotype information, for constructing the SNPList
use --threads for multi-threaded (used in compression of the output stream)

Don-Isdale self-assigned this

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