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Major Refactor: Add Ruff Linting, Nox, and Pre-Commit Hook #266

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Major Refactor: Add Ruff Linting, Nox, and Pre-Commit Hook #266

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Commits on Feb 21, 2024

  1. added ruff and nox.

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    BalzaniEdoardo committed Feb 21, 2024
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  2. config nox for the py3.12

    @BalzaniEdoardo
    BalzaniEdoardo committed Feb 21, 2024
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  3. add nox, ruff and a section on managing multiple python versions

    @BalzaniEdoardo
    BalzaniEdoardo committed Feb 21, 2024
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Commits on Feb 28, 2024

  1. adds src to ruff config

    @billbrod
    billbrod committed Feb 28, 2024
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  2. updates ruff version (to work with src config)

    @billbrod
    billbrod committed Feb 28, 2024
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Commits on Jul 6, 2024

  1. added ruff and pre-commit configurations

    @hmd101
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  2. basic precommit confi

    @hmd101
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  3. ruff linter added to ci

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Commits on Jul 9, 2024

  1. formatter added

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  2. default check added to ci

    @hmd101
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  3. assigned separate github actions to ruff code formatter and linters

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  4. test

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  5. test

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Commits on Jul 10, 2024

  1. ruff badge added to readme

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Commits on Jul 12, 2024

  1. noxfile added for automated testing across environments after commits

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  2. ruff linters, both ignore and select, specified

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  3. ruff check runs

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Commits on Jul 18, 2024

  1. linting merge

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  2. toml formatting

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  3. added addtional pre-commit hooks

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  4. pre-commit edits

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Commits on Jul 19, 2024

  1. default for max line length is 88

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  2. error in deploy file: pypi environment not defined

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Commits on Jul 20, 2024

  1. link changed to previous one in ci.yml

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Commits on Aug 4, 2024

  1. ruff linting and formatting combined in 1 action in CI and added to n… 

    …eeds field in check
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Commits on Aug 5, 2024

  1. ci -- calling ruff directly instead of via action

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  2. test

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  3. .

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  4. Merge branch 'main' into code-formatting

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  5. null changes in notebook reverted

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  6. in ci, specifying to use ruff config from pyproject.toml

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Commits on Aug 8, 2024

  1. updating some deprecated imports, isinstance for union of types, unso… 

    …rted imports, f-strings, replaced single quote with double quotes and deleted trailing whitespace
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  2. notebooks 00-quickstart and 02-eigendistortions line-length correction

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  3. Revert "notebooks 00-quickstart and 02-eigendistortions line-length c… 

    …orrection"

This reverts commit 4bb4333.
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  4. Revert "updating some deprecated imports, isinstance for union of typ… 

    …es, unsorted imports, f-strings, replaced single quote with double quotes and deleted trailing whitespace"

This reverts commit c1fd8bc.
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  5. additional line length and double quote fixes in 02-eigendistortions.… 

    …ipynb
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  6. all notebooks in experiments refactored to meet pydocstyle and pyflak… 

    …es criteria
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  7. all files in metric refactored to meet pydocstyle and pyflakes criteria

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  8. all files in simulate and models refactored to meet pydocstyle and py… 

    …flakes criteria
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  9. all files in src refactored to meet pydocstyle and pyflakes criteria

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Commits on Aug 9, 2024

  1. running pyupgrade linter to upgrade syntac for newer versions

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  2. running flake8 simplify on entire codebase

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  3. removing # noqa: UP035 tag

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Commits on Aug 13, 2024

  1. test coverage session added to noxfile

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  2. pytest ini_options adjustments to accomodate module not implemented e… 

    …rror when runnin nox sesssion tests
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  3. updating test session in nox file to install all dependencies as list… 

    …es in toml file and fixing none-type error in eigendistortions.py
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  4. pytest can now be run with nox including test coverage

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Commits on Aug 14, 2024

  1. resolving some too long lines

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  2. resolving merge conflict

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  3. too long lines in validate.py corrected

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  4. formatting with line-length set to 88

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  5. too long lines shortened to 88 characters in data and metric

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Commits on Aug 15, 2024

  1. .

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  2. some more fixes

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  3. removed .keys() from dictionary iteration, replaced if-else with 1-l… 

    …iners, used f-strings, shortened if statements with boolean expressions, added contextlib for with statements, and refactored lambda expressions into methods.
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Commits on Sep 13, 2024

  1. ignored SIM105 or do we want to use contextlib package instead of try… 

    …-except-pass blocks?
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Commits on Sep 17, 2024

  1. ambigious variable name in external refactored

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  2. tests test_metric and test_models fail

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Commits on Sep 19, 2024

  1. replacing if-else block with ternary conditional operator

    @hmd101
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  2. removing too long lines

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  3. replacing if-else block by returning boolean expression directly

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  4. returning boolean expression as opposed to if-if-else block

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  5. replacing nested if-else blocks with elif for readability

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Commits on Sep 27, 2024

  1. too long lines fixed

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  2. in optimizer_step in metamer.py condensed if statements and added che… 

    …ck for index out of bound
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  3. simplified decision tree conditions in check_convergence

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  4. metamers.py refactoring finnished and all tests in test_metamers.py pass

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  5. checking if module is available without importing it unnecessarily

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  6. ignoring import not being at top of file for fetch.py

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  7. updating union syntax to python 3.10 bar version, unrelated 420 sha-e… 

    …rrors and 2 failed tests asserting x < some threshold
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  8. ignoring unused imports linting error F401 in tools init file

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  9. ignoring unused imports linting error F401 in metric init file

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  10. ignoring wildcard imports linting error F403 in canonical computation… 

    …s init file
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  11. ignoring wildcard imports linting error F403 and unused imports F401 … 

    …in tools init file
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  12. added predicate ignore-init-module-imports to tool.ruff.lint in pypro… 

    …ject.toml and set it to true
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  13. removed predicate ignore-init-module-imports since deprecated

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  14. ignoring unused imports F401 and wildcard imports F403

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  15. ignoring unused imports F401 in synthesize init file

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  16. ignoring wildcard imports F401 in simlute init file

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  17. resolving linting error E402 imports not at top of cell

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  18. replacing union with pipe operator which resolves UP007 in steerable_… 

    …pyramid_freq.py
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  19. cutting line lenght

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  20. making if-blocks more readable and cutting long lines in mad_compteti… 

    …tion.py
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  21. placing imports to top of cell and shortening too long lines

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  22. fixing too long lines and placing imports at top of cell in notebookd… 

    …s 08 and 06.
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  23. reordering imports and fixing too long lines in notebook geodesics

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  24. .

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  25. shortening lines in eigendistortions.py

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  26. too long lines fixed in notebook metamer-portilla-simoncelli

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  27. too long lines fixed in notebook metamer-portilla-simoncelli

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  28. too long lines fixed in notebooks

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  29. too long lines fixed in notebooks

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  30. too long lines fixed in notebooks

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  31. too long lines fixed in notebooks

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  32. too long lines fixed in notebooks

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  33. replacing misleading characters l

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  34. replacing ambigious l with layer

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  35. shortening lines

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  36. replacing ambigious variable names

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  37. .

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  38. fixing too long lines

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  39. ignoring too long lines in notebook 05 does not work for curl statement

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  40. added isort linter and fixed 44 isort errors

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Commits on Sep 28, 2024

  1. reformatting

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  2. resolving merge conflict

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  3. tests run again and circular import error resolved

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  4. adding missing import data to init file

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  5. fixing linting error

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    hmd101 committed Sep 28, 2024
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  6. ruff version updated to 0.6.8, same as on cluster

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    hmd101 committed Sep 28, 2024
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  7. adding missing import conv to init in tools

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    hmd101 committed Sep 28, 2024
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  8. formatting fix

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    hmd101 committed Sep 28, 2024
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  9. editing string to mitigate notebook error for versions 3.10 and 3.11

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    hmd101 committed Sep 28, 2024
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Commits on Oct 1, 2024

  1. updated 3 cns links from http to https

    @hmd101
    hmd101 committed Oct 1, 2024
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  2. imports sorted in init

    @hmd101
    hmd101 committed Oct 1, 2024
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  3. isort ignored in init file, otherwise errors due to circulr inputs

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    hmd101 committed Oct 1, 2024
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  4. unused imports uncommented

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    hmd101 committed Oct 1, 2024
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  5. when unused imports are removed, tests fail, so included them again

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    hmd101 committed Oct 1, 2024
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  6. reformatting tests and updating contributing file

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    hmd101 committed Oct 1, 2024
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  7. contributing file update completed

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    hmd101 committed Oct 1, 2024
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