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added initialization to all variables
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@glessin
glessin committed Nov 2, 2023
1 parent 2e88016 commit 6f6b6d9
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4 changes: 4 additions & 0 deletions testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-denit.yaml
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Expand Up @@ -67,6 +67,7 @@ instances:
iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1
initialization:
c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3)
bioalk: 0 # bioalkalinity (mmol/m^3)
R1:
long_name: labile dissolved organic matter
model: ersem/pelagic_base
Expand Down Expand Up @@ -803,6 +804,7 @@ instances:
minD: 0.0001 # minimum depth of zero-concentration isocline (m)
initialization:
o: 0.0225 # oxygen (mmol/m^2)
o_deep: 0 # oxygen below zero isocline (mmol/m^2)
coupling:
o_pel: O2/o # pelagic oxygen (mmol/m^3)
G3:
Expand Down Expand Up @@ -863,6 +865,8 @@ instances:
K4n2: K4/per_layer/n2 # benthic ammonium in 2nd layer (mmol N/m^2)
G2o2: G2/per_layer/o2 # oxygen in 2nd layer (mmol O_2/m^2)
layer2_thickness: ben_col/layer2_thickness # thickness of 2nd layer (m)
initialization:
G4n: 0 # dinitrogen gas (mmol N/m^2)
H1:
long_name: benthic aerobic bacteria
model: ersem/benthic_bacteria
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4 changes: 4 additions & 0 deletions testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-n2o.yaml
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Expand Up @@ -65,6 +65,7 @@ instances:
iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1
initialization:
c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3)
bioalk: 0 # bioalkalinity (mmol/m^3)
R1:
long_name: labile dissolved organic matter
model: ersem/pelagic_base
Expand Down Expand Up @@ -796,6 +797,7 @@ instances:
minD: 0.0001 # minimum depth of zero-concentration isocline (m)
initialization:
o: 0.0225 # oxygen (mmol/m^2)
o_deep: 0 # oxygen below zero isocline (mmol/m^2)
coupling:
o_pel: O2/o # pelagic oxygen (mmol/m^3)
G5:
Expand Down Expand Up @@ -868,6 +870,8 @@ instances:
K4n2: K4/per_layer/n2 # benthic ammonium in 2nd layer (mmol N/m^2)
G2o2: G2/per_layer/o2 # oxygen in 2nd layer (mmol O_2/m^2)
layer2_thickness: ben_col/layer2_thickness # thickness of 2nd layer (m)
initialization:
G4n: 0 # dinitrogen gas (mmol N/m^2)
H1:
long_name: benthic aerobic bacteria
model: ersem/benthic_bacteria
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4 changes: 4 additions & 0 deletions testcases/fabm-ersem-15.06-L4-ben-docdyn-iop.yaml
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Expand Up @@ -59,6 +59,7 @@ instances:
iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1
initialization:
c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3)
bioalk: 0 # bioalkalinity (mmol/m^3)
R1:
long_name: labile dissolved organic matter
model: ersem/pelagic_base
Expand Down Expand Up @@ -787,6 +788,7 @@ instances:
minD: 0.0001 # minimum depth of zero-concentration isocline (m)
initialization:
o: 0.0225 # oxygen (mmol/m^2)
o_deep: 0 # oxygen below zero isocline (mmol/m^2)
coupling:
o_pel: O2/o # pelagic oxygen (mmol/m^3)
G3:
Expand Down Expand Up @@ -847,6 +849,8 @@ instances:
K4n2: K4/per_layer/n2 # benthic ammonium in 2nd layer (mmol N/m^2)
G2o2: G2/per_layer/o2 # oxygen in 2nd layer (mmol O_2/m^2)
layer2_thickness: ben_col/layer2_thickness # thickness of 2nd layer (m)
initialization:
G4n: 0 # dinitrogen gas (mmol N/m^2)
H1:
long_name: benthic aerobic bacteria
model: ersem/benthic_bacteria
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1 change: 1 addition & 0 deletions testcases/fabm-ersem-15.06-L4-noben-docdyn-iop.yaml
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Expand Up @@ -59,6 +59,7 @@ instances:
iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1
initialization:
c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3)
bioalk: 0 # bioalkalinity (mmol/m^3)
R1:
long_name: labile dissolved organic matter
model: ersem/pelagic_base
Expand Down
4 changes: 4 additions & 0 deletions testcases/fabm-ersem-Blackford2004-L4-ben-stdbac-stdlight.yaml
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Expand Up @@ -57,6 +57,7 @@ instances:
iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1
initialization:
c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3)
bioalk: 0 # bioalkalinity (mmol/m^3)
R1:
long_name: labile dissolved organic matter
model: ersem/pelagic_base
Expand Down Expand Up @@ -768,6 +769,7 @@ instances:
minD: 0.0001 # minimum depth of zero-concentration isocline (m)
initialization:
o: 0.0225 # oxygen (mmol/m^2)
o_deep: 0 # oxygen below zero isocline (mmol/m^2)
coupling:
o_pel: O2/o # pelagic oxygen (mmol/m^3)
G3:
Expand Down Expand Up @@ -828,6 +830,8 @@ instances:
K4n2: K4/per_layer/n2 # benthic ammonium in 2nd layer (mmol N/m^2)
G2o2: G2/per_layer/o2 # oxygen in 2nd layer (mmol O_2/m^2)
layer2_thickness: ben_col/layer2_thickness # thickness of 2nd layer (m)
initialization:
G4n: 0 # dinitrogen gas (mmol N/m^2)
H1:
long_name: benthic aerobic bacteria
model: ersem/benthic_bacteria
Expand Down
1 change: 1 addition & 0 deletions testcases/fabm-ersem-Blackford2004-L4-noben-stdbac-stdlight.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@ instances:
iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1
initialization:
c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3)
bioalk: 0 # bioalkalinity (mmol/m^3)
R1:
long_name: labile dissolved organic matter
model: ersem/pelagic_base
Expand Down

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