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minor fix - remove tick
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sebdalgarno committed Oct 28, 2024
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Expand Up @@ -154,7 +154,7 @@ The `rhat` threshold can be adjusted by the user.
`rhat` evaluates whether the chains agree on the same values.
As the total variance of all the chains shrinks to the average variance within chains, r-hat approaches 1.
Output of `glance()` also includes `ess` (Effective Sample Size), which represents the length of a chain (i.e., number of iterations) if each sample was independent of the one before it.
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By default, the `bboutools` Bayesian method saves 1,000 MCMC samples from each of three chains (after discarding the first halves).
The number of samples saved can be adjusted with the `niters` argument.
With `niters` set, the user can simply increment the thinning rate as required to achieve convergence (i.e., by decreasing `rhat`).
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