Automated doc build for refs/heads/main

popsim-consortium · Jul 5, 2024 · 7eb1d2a · 7eb1d2a
1 parent 6cc6939
commit 7eb1d2a
Show file tree

Hide file tree

Showing 12 changed files with 2 additions and 2 deletions.
diff --git a/main/_images/sec_catalog_anapla_models_mallardblackduck_2l19.png b/main/_images/sec_catalog_anapla_models_mallardblackduck_2l19.png
diff --git a/main/_images/sec_catalog_homsap_models_americanadmixture_4b11.png b/main/_images/sec_catalog_homsap_models_americanadmixture_4b11.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafrica_2t12.png b/main/_images/sec_catalog_homsap_models_outofafrica_2t12.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafrica_3g09.png b/main/_images/sec_catalog_homsap_models_outofafrica_3g09.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafrica_4j17.png b/main/_images/sec_catalog_homsap_models_outofafrica_4j17.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafricaarchaicadmixture_5r19.png b/main/_images/sec_catalog_homsap_models_outofafricaarchaicadmixture_5r19.png
diff --git a/.../sec_catalog_homsap_models_outofafricaextendedneandertaladmixturepulse_3i21.png b/.../sec_catalog_homsap_models_outofafricaextendedneandertaladmixturepulse_3i21.png
diff --git a/main/_images/sec_catalog_homsap_models_papuansoutofafrica_10j19.png b/main/_images/sec_catalog_homsap_models_papuansoutofafrica_10j19.png
diff --git a/main/_images/sec_catalog_orysat_models_bottleneckmigration_3c07.png b/main/_images/sec_catalog_orysat_models_bottleneckmigration_3c07.png
diff --git a/main/_images/sec_catalog_pantro_models_bonoboghost_4k19.png b/main/_images/sec_catalog_pantro_models_bonoboghost_4k19.png
diff --git a/main/_images/sec_catalog_ponabe_models_twospecies_2l11.png b/main/_images/sec_catalog_ponabe_models_twospecies_2l11.png
diff --git a/main/_modules/stdpopsim/slim_engine.html b/main/_modules/stdpopsim/slim_engine.html
@@ -172,7 +172,7 @@ <h1>Source code for stdpopsim.slim_engine</h1><div class="highlight"><pre>
 <span class="n">_slim_lower</span> <span class="o">=</span> <span class="s2">&quot;&quot;&quot;</span>
 <span class="s2">    defineConstant(&quot;N&quot;, asInteger(_N/Q));</span>
 
-<span class="s2">    initializeTreeSeq();</span>
+<span class="s2">    initializeTreeSeq(timeUnit=&quot;generations&quot;);</span>
 <span class="s2">    initializeRecombinationRate(recombination_rates, recombination_ends);</span>
 <span class="s2">}</span>
 
@@ -1792,7 +1792,7 @@ <h1>Source code for stdpopsim.slim_engine</h1><div class="highlight"><pre>
             <span class="n">slim_path</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">slim_path</span><span class="p">()</span>
 
         <span class="c1"># SLiM v3.6 sends `stop()` output to stderr, which we rely upon.</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_assert_min_version</span><span class="p">(</span><span class="s2">&quot;3.6&quot;</span><span class="p">,</span> <span class="n">slim_path</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_assert_min_version</span><span class="p">(</span><span class="s2">&quot;4.0&quot;</span><span class="p">,</span> <span class="n">slim_path</span><span class="p">)</span>
 
         <span class="n">slim_cmd</span> <span class="o">=</span> <span class="p">[</span><span class="n">slim_path</span><span class="p">]</span>
         <span class="k">if</span> <span class="n">seed</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>