write script

popsim-consortium · Jul 7, 2024 · 6d84bae · 6d84bae
1 parent a087382
commit 6d84bae
Showing 1 changed file with 14 additions and 0 deletions.
diff --git a/tests/test_slim_engine.py b/tests/test_slim_engine.py
@@ -100,6 +100,13 @@ def verify_slim_sim(self, ts, num_samples):
     @pytest.mark.usefixtures("tmp_path")
     def test_dfe_no_demography(self, tmp_path):
         fname = tmp_path / "test_dfe_no_demography.trees"
+        cmd = (
+            f"-q -e slim --slim-scaling-factor 50 --slim-path {slim_path} "
+            "--slim-script "
+            f"HomSap -c chr22 -l 0.02 -o {fname} --dfe Gamma_K17 -s 24 "
+            f"pop_0:5"
+        ).split()
+        capture_output(stdpopsim.cli.stdpopsim_main, cmd)
         cmd = (
             f"-q -e slim --slim-scaling-factor 50 --slim-path {slim_path} "
             f"HomSap -c chr22 -l 0.02 -o {fname} --dfe Gamma_K17 -s 24 "
@@ -122,6 +129,13 @@ def temp_file():
 
         with temp_file() as fn:
             f, fname = fn
+            cmd = (
+                f"-q -e slim --slim-scaling-factor 20 --slim-path {slim_path} "
+                "--slim-script "
+                f"HomSap -c chr22 -l 0.01 -o {fname} --dfe Gamma_K17 -s 984 "
+                f"pop_0:5"
+            ).split()
+            capture_output(stdpopsim.cli.stdpopsim_main, cmd)
             cmd = (
                 f"-q -e slim --slim-scaling-factor 20 --slim-path {slim_path} "
                 f"HomSap -c chr22 -l 0.01 -o {fname} --dfe Gamma_K17 -s 984 "