small changes

popsim-consortium · Oct 18, 2023 · 8c2def4 · 8c2def4
1 parent d7f28fe
commit 8c2def4
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Showing 2 changed files with 6 additions and 5 deletions.
diff --git a/stdpopsim/catalog/PhoSin/__init__.py b/stdpopsim/catalog/PhoSin/__init__.py
@@ -3,3 +3,4 @@
 """
 from . import species  # noqa: F401
 from . import demographic_models  # noqa: F401
+from . import annotations  # noqa: F401
diff --git a/stdpopsim/catalog/PhoSin/annotations.py b/stdpopsim/catalog/PhoSin/annotations.py
@@ -18,7 +18,7 @@
     intervals_sha256=(
         "9edf6886b6c830fff0482990b28e4c296a98249f7b3654537935d7214caabe"
         "8c4d90e64042a1c4c54df2f227ebb8b8ac4dcf73efb5eb834a14703a685b2af89d"
-    )
+    ),
     citations=[
         stdpopsim.Citation(
             year=2020,
@@ -28,7 +28,7 @@
         )
     ],
     file_pattern="Phocoena_sinus.mPhoSin1.pri.110_exon_{id}.txt",
-    annotation_source="NCBI",
+    annotation_source="ensembl",
     annotation_type="exon",
 )
 _species.add_annotations(_an)
@@ -42,15 +42,15 @@
         "https://ftp.ensembl.org/pub/release-110/"
         "gff3/phocoena_sinus/Phocoena_sinus.mPhoSin1.pri.110.chr.gff3.gz"
     ),
-    gff_sha256="dbc8640f8f2e046d063c45f160f39edcf729fc39549726603e389cb7b6ce542e"
+    gff_sha256="dbc8640f8f2e046d063c45f160f39edcf729fc39549726603e389cb7b6ce542e",
     intervals_url=(
         "https://stdpopsim.s3-us-west-2.amazonaws.com/"
         "annotations/PhoSin/Phocoena_sinus.mPhoSin1.pri.110_CDS.tar.gz"
     ),
     intervals_sha256=(
         "dfca06219c39e6e1df13cfc6bbd7ae574b51689fa19d221e5761def1e6119b"
         "9c92a9a31322ca1cb6ab0585da01c99c661e4dba34ce22e4e337919cde47f2de71"
-    )
+    ),
     citations=[
         stdpopsim.Citation(
             year=2020,
@@ -60,7 +60,7 @@
         )
     ],
     file_pattern="Phocoena_sinus.mPhoSin1.pri.110_CDS_{id}.txt",
-    annotation_source="NCBI",
+    annotation_source="ensembl",
     annotation_type="CDS",
 )
 _species.add_annotations(_an2)