new checksums

[chriscrsmith]

The annotations checksums changed in the vaquita annotation PR #1520 annotations maintenance script PR #1522.

$ python -m pytest
========================================================= test session starts =========================================================
platform linux -- Python 3.8.17, pytest-7.4.2, pluggy-1.3.0
rootdir: /home/chriscs/StdPopSim/Temp1/stdpopsim
configfile: setup.cfg
testpaths: tests
plugins: xdist-3.3.1, cov-4.1.0
4 workers [2416 items]  
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========================================================== warnings summary ===========================================================
tests/test_dfes.py: 7 warnings
tests/test_masking.py: 2 warnings
tests/test_slim_engine.py: 59 warnings
  /home/chriscs/Software/miniconda3/envs/stdpopsim2/lib/python3.8/site-packages/msprime/ancestry.py:831: TimeUnitsMismatchWarning: The initial_state has time_units=ticks but time is measured in generations in msprime. This may lead to significant discrepancies between the timescales. If you wish to suppress this warning, you can use, e.g., warnings.simplefilter('ignore', msprime.TimeUnitsMismatchWarning)
    warnings.warn(message, TimeUnitsMismatchWarning)

tests/test_utils.py::TestGammaPdf::test_gamma_pdf[x3-a3-loc3-scale3]
  /home/chriscs/StdPopSim/Temp1/stdpopsim/stdpopsim/utils.py:349: RuntimeWarning: invalid value encountered in divide
    y = (x - loc) / scale

tests/test_utils.py::TestGammaPdf::test_gamma_pdf[x3-a3-loc3-scale3]
  /home/chriscs/Software/miniconda3/envs/stdpopsim2/lib/python3.8/site-packages/scipy/stats/_distn_infrastructure.py:2093: RuntimeWarning: invalid value encountered in divide
    x = np.asarray((x - loc)/scale, dtype=dtyp)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
====================================== 2369 passed, 47 skipped, 70 warnings in 166.26s (0:02:46) ======================================

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (92b8b36) 99.86% compared to head (334a5a4) 99.86%.
Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #1537   +/-   ##
=======================================
  Coverage   99.86%   99.86%           
=======================================
  Files         128      129    +1     
  Lines        4300     4307    +7     
  Branches      594      594           
=======================================
+ Hits         4294     4301    +7     
  Misses          3        3           
  Partials        3        3           

Files	Coverage Δ
stdpopsim/catalog/AraTha/annotations.py	100.00% <ø> (ø)
stdpopsim/catalog/DroMel/annotations.py	100.00% <ø> (ø)
stdpopsim/catalog/HomSap/annotations.py	100.00% <ø> (ø)
stdpopsim/catalog/PhoSin/__init__.py	100.00% <100.00%> (ø)
stdpopsim/catalog/PhoSin/annotations.py	100.00% <100.00%> (ø)

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[petrelharp]

Why did all the checksums change? (Was it because of that error in the annotations maintenance script?)

[chriscrsmith]

I had figured its because of the change to the maintenance script, which changed the tarball and should not have affected the actual annotation files themselves.

[petrelharp]

That makes sense - just checking.