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Update changelog for 0.2.1a release #1575

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Jul 6, 2024
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46 changes: 43 additions & 3 deletions CHANGELOG.rst
Original file line number Diff line number Diff line change
@@ -1,11 +1,13 @@
--------------------
[0.2.1] - 2023-XX-XX
--------------------
---------------------
[0.2.1a] - 2024-07-06
---------------------

**Bug fixes**:

- Updates to SLiM support: updated the `active` flag in the SLiM code to be integer.`

- Factor of two error fixed in HomSap/Gamma_K17 DFE (:user:`RyanGutenkunst`, :pr:`1478`)

**Breaking changes**:

- The `time_units` attribute of tree sequence metadata is now set to "generations"
Expand Down Expand Up @@ -46,6 +48,44 @@
- Mus musculus (:user:`peterdfields`, :pr:`1437`).
QC'd by :user:`igronau`, :pr:`1454`.

- Orzya sativa (:user:`ornobalam`, :pr:`1453`).
QC'd by :user:`minesrebollo`, :pr:`1461`

- Phocoena sinus (:user:`igronau`, :pr:`1514`).
QC'd by :user:`ckyriazis`, :pr:`1538`

**New DFEs**:

- HomSap/LogNormal_H17 (:user:`RyanGutenkunst`, :pr:`1480`)

- HomSap/Mixed_K23 (:user:`chriscrsmith`, :pr:`1505`)

- PhoSin/Gamma_R22 (:user:`igronau`, :pr:`1547`)
QC'd by :user:`ckyriazis`, :pr:`1560`

- Generic "uniform" DFE (:user:`petrelharp`, :pr:`1492`)

**New demographic models**:

- MusMus/DomesticusEurope_1F22 (:user:`peterdfields`, :pr:`1485`)
QC'd by :user:`igronau`, :pr:`1531`

- MusMus/MusculusKorea_1F22 (:user:`peterdfields`, :pr:`1485`)
QC'd by :user:`igronau`, :pr:`1531`

- MusMus/CastaneusIndia_1F22 (:user:`peterdfields`, :pr:`1485`)
QC'd by :user:`igronau`, :pr:`1531`

- OrySat/BottleneckMigration_3C07 (:user:`ornobalam`, :pr:`1453`)
QC'd by :user:`petrelharp`, :pr:`1524`

- PhoSin/Vaquita2Epoch_1R22 (:user:`igronau`, :pr:`1526`)
QC'd by :user:`ckyriazis`, :pr:`1538`

**New annotations**:

- PhoSin exons and CDS (:user:`chriscrsmith`, :pr:`1520`)

--------------------
[0.2.0] - 2022-11-01
--------------------
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