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various fixes after msprime api updates #1585

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merged 6 commits into from
Sep 20, 2024

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silastittes
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All the pairs run successfully and generate output now. Might be worth a spot check or two by someone else that a. knows what the previous output looked like b. has a different version of libraries installed (I'm using the analysis2 conda env).

Closes #786

@silastittes
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oh good, I see validation is part of the CI checks. Fixing linting, etc. now.

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codecov bot commented Aug 27, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 99.81%. Comparing base (ddc70ca) to head (14b6842).
Report is 6 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #1585   +/-   ##
=======================================
  Coverage   99.81%   99.81%           
=======================================
  Files         130      130           
  Lines        4354     4354           
  Branches      597      597           
=======================================
  Hits         4346     4346           
  Misses          3        3           
  Partials        5        5           

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@silastittes
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Looks like this is failing for the same reasons as main? This should be good now.

validation.py Outdated Show resolved Hide resolved
@petrelharp petrelharp merged commit 0d91be4 into popsim-consortium:main Sep 20, 2024
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update validation.py after demography API changes
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